TDR Targets

Basic information

Technical information

TDR Targets ID: 433505
Name: N-[4-chloro-3-[(4-methylpiperazin-1-yl)methyl ]phenyl]-6-(1H-pyrrolo[2,3-b]pyridin-4-yloxy) -1H-benzimidazol-2-amine
MW: 487.984 | Formula: C26H26ClN7O
H donors: 3 H acceptors: 2 LogP: 4.56 Rotable bonds: 6
Rule of 5 violations (Lipinski): 1
SMILES: CN1CCN(CC1)Cc1cc(ccc1Cl)Nc1nc2c([nH]1)ccc(c2)Oc1ccnc2c1cc[nH]2
InChi: 1S/C26H26ClN7O/c1-33-10-12-34(13-11-33)16-17-14-18(2-4-21(17)27)30-26-31-22-5-3-19(15-23(22)32-26)35-24-7-9-29-25-20(24)6-8-28-25/h2-9,14-15H,10-13,16H2,1H3,(H,28,29)(H2,30,31,32)
InChiKey: GXVPRRQXIWVLPD-UHFFFAOYSA-N

Network

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Target Layer

Model Organisms

Species	Viewmode
Arabidopsis thaliana
Caenorhabditis elegans
Dictyostelium discoideum
Drosophila melanogaster
Escherichia coli
Homo sapiens
Mus musculus
Oryza sativa
Saccharomyces cerevisiae
Schmidtea mediterranea
Other organisms

TDR Pathogens:

Species	Viewmode
Brugia malayi
Chlamydia trachomatis
Echinococcus granulosus
Entamoeba histolytica
Echinococcus multilocularis
Giardia lamblia
Leishmania major
Loa Loa (eye worm)
Mycobacterium leprae
Mycobacterium tuberculosis
Mycobacterium ulcerans
Onchocerca volvulus
Plasmodium falciparum
Plasmodium vivax
Schistosoma mansoni
Trypanosoma brucei
Trypanosoma cruzi
Toxoplasma gondii
Treponema pallidum
Trichomonas vaginalis
Wolbachia endosymbiont of Brugia malayi

Other Pathogens:

Species	Viewmode
Babesia bovis
Candida albicans
Cryptosporidium hominis
Cryptosporidium parvum
Leishmania braziliensis
Leishmania donovani
Leishmania infantum
Leishmania mexicana
Neospora caninum
Plasmodium berghei
Plasmodium knowlesi
Plasmodium yoelii
Schistosoma japonicum
Trypanosoma brucei gambiense
Trypanosoma congolense
Theileria parva

Compound Layer

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Clustering layers

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Synonyms

N-[4-chloro-3-[(4-methyl-1-piperazinyl)methyl]phenyl]-6-(1H-pyrrolo[2,3-b]pyridin-4-yloxy)-1H-benzimidazol-2-amine
[4-chloro-3-[(4-methylpiperazino)methyl]phenyl]-[6-(1H-pyrrolo[2,3-b]pyridin-4-yloxy)-1H-benzimidazol-2-yl]amine

Targets

Known targets for this compound

Species	Target name	Source	Bibliographic reference
Homo sapiens	kinase insert domain receptor	Starlite/ChEMBL	References

Predicted pathogen targets for this compound

By orthology

Species	Potential target	Known druggable target/s	Ortholog Group
Loa Loa (eye worm)	TK/KIN16 protein kinase	Get druggable targets OG5_130320	All targets in OG5_130320
Brugia malayi	Immunoglobulin I-set domain containing protein	Get druggable targets OG5_130320	All targets in OG5_130320
Onchocerca volvulus		Get druggable targets OG5_130320	All targets in OG5_130320
Onchocerca volvulus	Tyrosine kinase homolog	Get druggable targets OG5_130320	All targets in OG5_130320

By sequence similarity to non orthologous known druggable targets

No druggable targets predicted by sequence similarity

Ranking Plot

Putative Targets List

Species	Potential target	Raw	Global	Species
Echinococcus granulosus	FKBP12 rapamycin complex associated protein	0.0053	0.0521	0.0521
Trichomonas vaginalis	PIKK family atypical protein kinase	0.003	0.0211	0.3062
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Echinococcus granulosus	serine:threonine protein kinase SMG1	0.003	0.0211	0.0211
Trypanosoma cruzi	hypothetical protein, conserved	0.0266	0.3375	1
Trypanosoma cruzi	phosphatidylinositol 3-kinase, putative	0.003	0.0211	0.0414
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Schistosoma mansoni	ataxia telangiectasia mutated (atm)-related	0.0053	0.0521	1
Trypanosoma cruzi	phosphatidylinositol kinase related protein, putative	0.003	0.0211	0.0414
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Brugia malayi	Phosphatidylinositol 3- and 4-kinase family protein	0.003	0.0211	0.0425
Loa Loa (eye worm)	hypothetical protein	0.002	0.0075	0.0285
Loa Loa (eye worm)	phosphatidylinositol 3	0.0053	0.0521	0.2269
Brugia malayi	Phosphatidylinositol 3- and 4-kinase family protein	0.0053	0.0521	0.1872
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Loa Loa (eye worm)	hypothetical protein	0.0033	0.0257	0.1096
Echinococcus granulosus	serine protein kinase ATM	0.003	0.0211	0.0211
Loa Loa (eye worm)	phosphatidylinositol 3	0.0053	0.0521	0.2269
Trichomonas vaginalis	PIKK family atypical protein kinase	0.003	0.0211	0.3062
Loa Loa (eye worm)	TK/KIN16 protein kinase	0.0183	0.2259	1
Echinococcus granulosus	phosphatidylinositol 3 and 4 kinase	0.0053	0.0521	0.0521
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.003	0.0211	0.3062
Trypanosoma brucei	target of rapamycin kinase 3, putative	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Echinococcus granulosus	roundabout 2	0.0018	0.0049	0.0049
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trypanosoma cruzi	target of rapamycin kinase 3	0.0053	0.0521	0.1352
Echinococcus multilocularis	roundabout 2	0.0018	0.0049	0.0049
Trichomonas vaginalis	conserved hypothetical protein	0.0023	0.012	0.1025
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trypanosoma brucei	phosphatidylinositol 3-related kinase, putative	0.0053	0.0521	1
Loa Loa (eye worm)	hypothetical protein	0.0018	0.0049	0.0171
Loa Loa (eye worm)	hypothetical protein	0.003	0.0211	0.0892
Onchocerca volvulus	Tyrosine kinase homolog	0.0171	0.2097	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.003	0.0211	0.3062
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trypanosoma cruzi	Phosphatidylinositol 3-kinase tor1	0.0053	0.0521	0.1352
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Schistosoma mansoni	phosphatidylinositol 3-and 4-kinase	0.0053	0.0521	1
Echinococcus multilocularis	serine:threonine protein kinase SMG1	0.003	0.0211	0.0211
Echinococcus granulosus	PIK kinase FAT and Armadillo domain containing protein	0.0023	0.012	0.012
Trypanosoma brucei	phosphatidylinositol 4-kinase, putative	0.0053	0.0521	1
Trypanosoma cruzi	phosphatidylinositol 3-related kinase, putative	0.0053	0.0521	0.1352
Trichomonas vaginalis	PIKK family atypical protein kinase	0.003	0.0211	0.3062
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Loa Loa (eye worm)	hypothetical protein	0.0018	0.0049	0.0171
Trypanosoma cruzi	phosphatidylinositol 3-related kinase, putative	0.0053	0.0521	0.1352
Echinococcus multilocularis	FKBP12 rapamycin complex associated protein	0.0053	0.0521	0.0521
Brugia malayi	Phosphatidylinositol 3- and 4-kinase family protein	0.0053	0.0521	0.1872
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Schistosoma mansoni	ataxia telangiectasia mutated (atm)	0.003	0.0211	0.4056
Schistosoma mansoni	fkbp-rapamycin associated protein	0.003	0.0211	0.4056
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Schistosoma mansoni	hypothetical protein	0.0023	0.012	0.2312
Trypanosoma cruzi	Phosphatidylinositol 3-kinase tor2	0.0053	0.0521	0.1352
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Echinococcus multilocularis	PIK kinase, FAT and Armadillo domain containing protein	0.0023	0.012	0.012
Loa Loa (eye worm)	hypothetical protein	0.0023	0.012	0.0488
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.003	0.0211	0.3062
Echinococcus multilocularis	phosphatidylinositol 3 and 4 kinase	0.0053	0.0521	0.0521
Brugia malayi	Immunoglobulin I-set domain containing protein	0.0183	0.2259	1
Trichomonas vaginalis	conserved hypothetical protein	0.0033	0.0257	0.4087
Trichomonas vaginalis	PIKK family atypical protein kinase	0.003	0.0211	0.3062
Toxoplasma gondii	non-specific serine/threonine protein kinase	0.0033	0.0257	0.1478
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Entamoeba histolytica	FKBP-rapamycin associated protein (FRAP), putative	0.0053	0.0521	1
Giardia lamblia	GTOR	0.0053	0.0521	0.5
Trypanosoma brucei	phosphatidylinositol 3-kinase, putative	0.0053	0.0521	1
Schistosoma mansoni	cell adhesion molecule	0.0015	0.0011	0.0204
Toxoplasma gondii	target of rapamycin (TOR), putative	0.0053	0.0521	1
Echinococcus multilocularis	serine protein kinase ATM	0.003	0.0211	0.0211
Echinococcus multilocularis	DNA dependent protein kinase catalytic subunit	0.076	1	1
Brugia malayi	Phosphatidylinositol 3- and 4-kinase family protein	0.003	0.0211	0.0425
Trypanosoma brucei	FAT domain/Rapamycin binding domain/Phosphatidylinositol 3- and 4-kinase, putative	0.0033	0.0257	0.1478
Echinococcus granulosus	neurotracting:lsamp:neurotrimin:obcam	0.0015	0.0011	0.0011
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0033	0.0257	0.4087
Entamoeba histolytica	phosphatidylinositol3-kinaseTor2, putative	0.0053	0.0521	1
Trypanosoma brucei	Phosphatidylinositol 3-kinase tor1	0.0053	0.0521	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0053	0.0521	1
Leishmania major	hypothetical protein, conserved	0.0276	0.3511	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.003	0.0211	0.3062

Activities

Activity type	Activity value	Assay description	Source	Reference
IC50 (functional)	= 143 nM	Inhibition of VEGF-stimulated HUVEC cell proliferation after 72 hrs	ChEMBL.	17696416
IC50 (functional)	= 143 nM	Inhibition of VEGF-stimulated HUVEC cell proliferation after 72 hrs	ChEMBL.	17696416
Ki (functional)	= 3 nM	Inhibition of KDR phosphorylation	ChEMBL.	17696416
Ki (functional)	= 3 nM	Inhibition of KDR phosphorylation	ChEMBL.	17696416

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

ChEMBL: CHEMBL397497
PubChem: 17755724

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this compound, please enter them in a user comment (below) or Contact us.

Detailed information for compound 433505