TDR Targets

Basic information

Technical information

TDR Targets ID: 59478
Name: 1-[2-[(2-chlorophenyl)-phenylmethoxy]ethyl]-2 -methyl-5-nitroimidazole
MW: 371.818 | Formula: C19H18ClN3O3
H donors: 0 H acceptors: 3 LogP: 4.18 Rotable bonds: 7
Rule of 5 violations (Lipinski): 1
SMILES: Clc1ccccc1C(c1ccccc1)OCCn1c(C)ncc1[N+](=O)[O-]
InChi: 1S/C19H18ClN3O3/c1-14-21-13-18(23(24)25)22(14)11-12-26-19(15-7-3-2-4-8-15)16-9-5-6-10-17(16)20/h2-10,13,19H,11-12H2,1H3
InChiKey: ZHHNIYKZKGRHDG-UHFFFAOYSA-N

Network

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Target Layer

Model Organisms

Species	Viewmode
Arabidopsis thaliana
Caenorhabditis elegans
Dictyostelium discoideum
Drosophila melanogaster
Escherichia coli
Homo sapiens
Mus musculus
Oryza sativa
Saccharomyces cerevisiae
Schmidtea mediterranea
Other organisms

TDR Pathogens:

Species	Viewmode
Brugia malayi
Chlamydia trachomatis
Echinococcus granulosus
Entamoeba histolytica
Echinococcus multilocularis
Giardia lamblia
Leishmania major
Loa Loa (eye worm)
Mycobacterium leprae
Mycobacterium tuberculosis
Mycobacterium ulcerans
Onchocerca volvulus
Plasmodium falciparum
Plasmodium vivax
Schistosoma mansoni
Trypanosoma brucei
Trypanosoma cruzi
Toxoplasma gondii
Treponema pallidum
Trichomonas vaginalis
Wolbachia endosymbiont of Brugia malayi

Other Pathogens:

Species	Viewmode
Babesia bovis
Candida albicans
Cryptosporidium hominis
Cryptosporidium parvum
Leishmania braziliensis
Leishmania donovani
Leishmania infantum
Leishmania mexicana
Neospora caninum
Plasmodium berghei
Plasmodium knowlesi
Plasmodium yoelii
Schistosoma japonicum
Trypanosoma brucei gambiense
Trypanosoma congolense
Theileria parva

Compound Layer

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Clustering layers

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Synonyms

1-[2-[(2-chlorophenyl)-phenyl-methoxy]ethyl]-2-methyl-5-nitro-imidazole
AIDS-121175
Diarylmethoxyethylmethylnitroimidazole (DAMNI) 4
1-{2-[alpha-(2-Chlorophenyl)phenylmethoxy]ethyl}-2-methyl-5-nitorimidazole
AIDS121175

Targets

Known targets for this compound

Species	Target name	Source	Bibliographic reference
Human immunodeficiency virus 1	Human immunodeficiency virus type 1 reverse transcriptase	Starlite/ChEMBL	References

Predicted pathogen targets for this compound

By orthology

Species	Potential target	Known druggable target/s	Ortholog Group
Trypanosoma congolense	RNA helicase, putative	Get druggable targets OG5_139608	All targets in OG5_139608
Schistosoma mansoni	hypothetical protein	Get druggable targets OG5_139608	All targets in OG5_139608
Plasmodium yoelii	integrase-related	Get druggable targets OG5_139608	All targets in OG5_139608
Trypanosoma brucei	RNA helicase, putative	Get druggable targets OG5_139608	All targets in OG5_139608

By sequence similarity to non orthologous known druggable targets

No druggable targets predicted by sequence similarity

Ranking Plot

Putative Targets List

Species	Potential target	Raw	Global	Species
Trichomonas vaginalis	Clan CA, family C1, papain-like cysteine peptidase	0.0362	1	1
Trypanosoma cruzi	cysteine peptidase, clan CA, family C1, cathepsin L-like, putative	0.0242	0.5433	0.5061
Trypanosoma cruzi	cysteine peptidase, putative	0.0362	1	1
Brugia malayi	Papain family cysteine protease containing protein	0.0362	1	1
Plasmodium falciparum	cysteine proteinase falcipain 2b	0.0362	1	1
Leishmania major	cathepsin L-like protease	0.0362	1	0.5
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0242	0.5433	0.3182
Leishmania major	cathepsin L-like protease	0.0362	1	0.5
Brugia malayi	Cathepsin L-like precursor	0.0362	1	1
Loa Loa (eye worm)	papain family cysteine protease containing protein	0.0362	1	1
Schistosoma mansoni	cathepsin F (C01 family)	0.0362	1	1
Loa Loa (eye worm)	hypothetical protein	0.0362	1	1
Plasmodium vivax	unspecified product	0.0187	0.3301	0.2757
Trypanosoma cruzi	cysteine peptidase (N-terminal), putative	0.0187	0.3301	0.2757
Trichomonas vaginalis	Clan CA, family C1, papain-like cysteine peptidase	0.0362	1	1
Leishmania major	cathepsin L-like protease	0.0362	1	0.5
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Leishmania major	cathepsin L-like protease	0.0362	1	0.5
Loa Loa (eye worm)	ctsf protein	0.0362	1	1
Leishmania major	cathepsin L-like protease	0.0362	1	0.5
Schistosoma mansoni	SmCL2-like peptidase (C01 family)	0.0187	0.3301	0.3301
Entamoeba histolytica	cysteine proteinase, putative	0.0362	1	1
Leishmania major	cathepsin L-like protease	0.0362	1	0.5
Leishmania major	cathepsin L-like protease	0.0362	1	0.5
Trypanosoma cruzi	cysteine protease, putative	0.0187	0.3301	0.2757
Onchocerca volvulus		0.0362	1	1
Schistosoma mansoni	cathepsin F (C01 family)	0.0362	1	1
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Loa Loa (eye worm)	cysteine protease	0.0362	1	1
Plasmodium falciparum	cysteine proteinase falcipain 3	0.0362	1	1
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Entamoeba histolytica	cysteine protease, putative	0.0362	1	1
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Trypanosoma cruzi	cysteine peptidase, putative	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Trypanosoma cruzi	cysteine peptidase, putative	0.0187	0.3301	0.2757
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Plasmodium vivax	vivapain-3	0.0187	0.3301	0.2757
Schistosoma mansoni	SmCL2-like peptidase (C01 family)	0.0187	0.3301	0.3301
Trypanosoma cruzi	cysteine proteinase, putative	0.0187	0.3301	0.2757
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Echinococcus granulosus	cathepsin L cysteine proteinase	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, papain-like cysteine peptidase	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, papain-like cysteine peptidase	0.0362	1	1
Brugia malayi	Cathepsin L-like precursor	0.0362	1	1
Schistosoma mansoni	cathepsin s	0.012	0.0752	0.0752
Echinococcus granulosus	cathepsin l1	0.0362	1	1
Brugia malayi	Papain family cysteine protease containing protein	0.0187	0.3301	0.2757
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Entamoeba histolytica	cysteine proteinase, putative	0.0242	0.5433	0.3182
Brugia malayi	cathepsin L-like precursor	0.0242	0.5433	0.5061
Echinococcus multilocularis	cathepsin L cysteine protease	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L or K-like cysteine peptidase	0.0362	1	1
Brugia malayi	Papain family cysteine protease containing protein	0.0187	0.3301	0.2757
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Loa Loa (eye worm)	hypothetical protein	0.0242	0.5433	0.5061
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Onchocerca volvulus	Cathepsin L homolog	0.0362	1	1
Onchocerca volvulus		0.0362	1	1
Echinococcus multilocularis	cathepsin l cysteine peptidase	0.0362	1	1
Entamoeba histolytica	cysteine proteinase, putative	0.0362	1	1
Echinococcus multilocularis	cathepsin L cysteine protease	0.0362	1	1
Loa Loa (eye worm)	hypothetical protein	0.0242	0.5433	0.5061
Brugia malayi	Cathepsin L-like precursor	0.0362	1	1
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0187	0.3301	0.3301
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Onchocerca volvulus		0.0362	1	1
Brugia malayi	Cathepsin L-like precursor	0.0362	1	1
Onchocerca volvulus		0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L or K-like cysteine peptidase	0.0362	1	1
Echinococcus granulosus	cathepsin l1	0.0242	0.5433	0.3182
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0187	0.3301	0.3301
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Onchocerca volvulus		0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, papain-like cysteine peptidase	0.0362	1	1
Onchocerca volvulus	Cathepsin L homolog	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, papain-like cysteine peptidase	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Onchocerca volvulus		0.0362	1	1
Plasmodium vivax	vivapain-2	0.0362	1	1
Trypanosoma cruzi	cysteine peptidase, putative	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Plasmodium falciparum	cysteine proteinase falcipain 2a	0.0362	1	1
Onchocerca volvulus		0.0362	1	1
Brugia malayi	Cathepsin L-like precursor	0.0242	0.5433	0.5061
Trichomonas vaginalis	Clan CA, family C1, papain-like cysteine peptidase	0.0362	1	1
Brugia malayi	Cathepsin L-like cysteine proteinase	0.0242	0.5433	0.5061
Schistosoma mansoni	SmCL2-like peptidase (C01 family)	0.0187	0.3301	0.3301
Trypanosoma cruzi	cysteine peptidase, putative	0.0362	1	1
Trypanosoma brucei	cysteine peptidase, Clan CA, family C1, Cathepsin L-like	0.0362	1	1
Brugia malayi	Cathepsin L-like precursor	0.0362	1	1
Echinococcus multilocularis	cysteine protease	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Onchocerca volvulus	Cathepsin F homolog	0.0362	1	1
Echinococcus multilocularis	cysteine protease	0.0362	1	1
Plasmodium vivax	vivapain-2	0.0362	1	1
Plasmodium vivax	vivapain-1	0.0187	0.3301	0.2757
Brugia malayi	Cathepsin L-like precursor	0.0242	0.5433	0.5061
Loa Loa (eye worm)	fibroinase	0.0362	1	1
Toxoplasma gondii	cathepsin CPL	0.0362	1	0.5
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0242	0.5433	0.3182
Trichomonas vaginalis	Clan CA, family C1, papain-like cysteine peptidase	0.0362	1	1
Echinococcus multilocularis	cathepsin l cysteine peptidase	0.0362	1	1
Schistosoma mansoni	cathepsin F (C01 family)	0.0242	0.5433	0.5433
Trypanosoma cruzi	cysteine proteinase, putative	0.0187	0.3301	0.2757
Trypanosoma cruzi	cruzipain precursor, putative	0.0362	1	1
Echinococcus granulosus	cathepsin l cysteine peptidase	0.0362	1	1
Loa Loa (eye worm)	Papain cysteine protease/cathepsin propeptide inhibitor-containing protein	0.0362	1	1
Trichomonas vaginalis	Clan CA, family C1, cathepsin L-like cysteine peptidase	0.0362	1	1
Loa Loa (eye worm)	hypothetical protein	0.0242	0.5433	0.5061
Leishmania major	cysteine peptidase A (CPA)	0.0362	1	0.5
Leishmania major	cathepsin L-like protease	0.0362	1	0.5
Trichomonas vaginalis	Clan CA, family C1, papain-like cysteine peptidase	0.0362	1	1

Activities

Activity type	Activity value	Assay description	Source	Reference
CC50 (functional)	= 52 uM	Dose required to reduce the viability of mock-infected cells by 50%	ChEMBL.	11931611
CC50 (functional)	= 52 uM	Dose required to reduce the viability of mock-infected cells by 50%	ChEMBL.	11931611
EC50 (functional)	= 0.6 uM	Dose required to achieve 50% protection of MT-4 cells from HIV-1 induced cytopathogenicity	ChEMBL.	11931611
IC50 (binding)	= 0.6 uM	Dose required to inhibit the HIV-1 Reverse transcriptase activity by 50%	ChEMBL.	11931611
IC50 (binding)	= 0.6 uM	Dose required to inhibit the HIV-1 Reverse transcriptase activity by 50%	ChEMBL.	11931611
Selectivity index (functional)	= 85	Selectivity Index of the compound (CC50:EC50 Ratio)	ChEMBL.	11931611

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

ChEMBL: CHEMBL288535
PubChem: 492014

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this compound, please enter them in a user comment (below) or Contact us.

Detailed information for compound 59478