Detailed view for Smp_083980

Basic information

TDR Targets ID: 293124
Schistosoma mansoni, hypothetical protein
Source Database / ID:  GeneDB

pI: 8.9677 | Length (AA): 328 | MW (Da): 37996 | Paralog Number: 2

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00858   Amiloride-sensitive sodium channel

Gene Ontology

Mouse over links to read term descriptions.
GO:0016020   membrane  
GO:0005272   sodium channel activity  
GO:0006814   sodium ion transport  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There is 1 model calculated for this protein. More info on this model, including the model itself is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
155 284 1mu2 (A) 169 282 32.00 0.76 0.17 0.210841 1.55

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_174101)

Species Accession Gene Product
Schistosoma japonicum Sjp_0030720   expressed protein
Schistosoma japonicum Sjp_0021390   IPR001873,Na+ channel, amiloride-sensitive,domain-containing
Schistosoma japonicum Sjp_0122140   expressed protein
Schistosoma japonicum Sjp_0095040   IPR001873,Na+ channel, amiloride-sensitive,domain-containing
Schistosoma japonicum Sjp_0122130   IPR001873,Na+ channel, amiloride-sensitive,domain-containing
Schistosoma mansoni Smp_083980   hypothetical protein
Schistosoma mansoni Smp_189390   hypothetical protein
Schistosoma mansoni Smp_170810   hypothetical protein
Schmidtea mediterranea mk4.029686.02  

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.018 0.9868 1
0.0092 0.722 1
0.0029 0.6661 0.6661
0.018 1 1
0.0029 0.5498 0.5498
0.011 1 1
0.003 0.3948 0.6411
0.0154 0.5 0.5
0.0177 0.5 0.5
0.0029 0.6786 0.6786
0.0156 1 1
0.003 0.703 0.703

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_083980 (Schistosoma mansoni), hypothetical protein
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