Detailed view for OVOC1424

Basic information

TDR Targets ID: 987350
Onchocerca volvulus, Heat shock factor protein 2 homolog
Source Database / ID:  Wormbase Parasite  

pI: 5.1452 | Length (AA): 658 | MW (Da): 72273 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00447  

Gene Ontology

Mouse over links to read term descriptions.
GO:0006355   regulation of transcription, DNA-dependent  
GO:0005634   nucleus  
GO:0043565   sequence-specific DNA binding  
GO:0003700   transcription factor activity  

Metabolic Pathways

Longevity regulating pathway - worm (KEGG)
Legionellosis (KEGG)

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
83 190 2ldu (A) 17 122 51.00 0 1 0.91987 -1.52
83 188 5hdk (A) 7 110 51.00 0 1 0.858094 -1.59

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129203)

Species Accession Gene Product
Arabidopsis thaliana AT4G36990   heat stress transcription factor B-1
Arabidopsis thaliana AT3G63350   heat stress transcription factor A-7b
Arabidopsis thaliana AT4G18880   heat stress transcription factor A-4a
Brugia malayi Bm1_17165   HSF-type DNA-binding domain containing protein
Candida albicans CaO19.4775   similar to S. cerevisiae Heat Shock Factor HSF1 (YGL073W) RNA Pol II transcriptional activator
Candida albicans CaO19.12238   similar to S. cerevisiae Heat Shock Factor HSF1 (YGL073W) RNA Pol II transcriptional activator
Caenorhabditis elegans CELE_Y53C10A.12   Protein HSF-1
Dictyostelium discoideum DDB_G0281165   heat shock factor -type DNA-binding domain-containing protein
Drosophila melanogaster Dmel_CG5748   Heat shock factor
Entamoeba histolytica EHI_200020   heat shock transcription factor, putative
Entamoeba histolytica EHI_049510   heat shock transcription factor, putative
Entamoeba histolytica EHI_087630   heat shock transcription factor, putative
Homo sapiens ENSG00000185122   heat shock transcription factor 1
Loa Loa (eye worm) LOAG_08901   hypothetical protein
Mus musculus ENSMUSG00000022556   heat shock factor 1
Onchocerca volvulus OVOC1424   Heat shock factor protein 2 homolog
Saccharomyces cerevisiae YGL073W   Hsf1p
Schmidtea mediterranea mk4.000226.05   Heat shock factor protein 2
Schmidtea mediterranea mk4.000226.06   Heat shock factor protein 2

Essentiality

OVOC1424 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_Y53C10A.12 Caenorhabditis elegans adult lethal wormbase
CELE_Y53C10A.12 Caenorhabditis elegans larval arrest wormbase
CELE_Y53C10A.12 Caenorhabditis elegans larval lethal wormbase
CELE_Y53C10A.12 Caenorhabditis elegans slow growth wormbase
CELE_Y53C10A.12 Caenorhabditis elegans sterile wormbase
YGL073W Saccharomyces cerevisiae inviable yeastgenome
Show/Hide essentiality data references
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens heat shock transcription factor 1 Compounds References
Mus musculus heat shock factor 1 Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.012 0.3187 1
0.0111 0.4317 0.5
0.0101 0.5211 0.583
0.012 0.2623 1
0.052 0.2988 1
0.1265 0.3795 1
0.012 0.3061 0.7636
0.0321 1 0.5
0.012 0.3015 0.5
0.0107 0.26 1
0.012 0.3657 1
0.0097 0.6344 1
0.012 0.337 1
0.0112 0.3168 0.6571
0.0098 0.5426 1
0.03 0.4008 0.6574
0.0568 0.5728 1
0.0096 0.4785 1
0.0101 0.2637 0.6088
0.012 0.3044 1
0.0101 0.2689 0.2686
0.0406 0.4174 1
0.0098 0.3456 0.5376
0.0102 0.2705 0.6855
0.0324 0.3858 1
0.0102 0.2543 1
0.012 0.2869 0.5
0.0099 0.5426 1
0.0564 1 0.5
0.012 0.3187 1
0.0104 0.2887 0.4987
0.012 0.2593 0
0.011 0.392 1
0.0111 0.3929 1
0.0097 0.2648 0.4889
0.0098 0.3017 0.3017
0.012 0.2991 1
0.012 0.4152 1
0.0101 0.2637 0.6088
0.012 0.4498 0.6745
0.012 1 1
0.012 0.3934 0.3916
0.0097 0.2664 0.5089
0.0099 0.3633 1
0.012 0.3657 1
0.0106 0.3236 0.5
0.0096 0.267 1
0.0115 0.2958 0.3892
0.1135 0.3983 1
0.0441 0.5396 0.8462
0.0098 0.2619 1
0.012 0.3187 1
0.0101 0.3885 0.3588
0.0114 1 0.5
0.032 0.414 0.6491
0.0103 0.2704 0.3869
0.012 0.2619 0.2709
0.0098 0.3456 0.5376
0.01 0.2903 0.4679
0.012 0.3145 0.3048
0.0101 0.5267 0.5902
0.0528 0.3558 1
0.0524 0.6694 1
0.012 0.3657 1
0.0096 0.2543 1
0.1275 0.3821 1
0.0118 0.3114 1
0.0099 0.2543 1
0.0098 0.3012 1
0.103 0.385 1
0.0066 0.3989 1
0.103 0.385 1
0.012 0.6554 1
0.012 0.2662 0.3378
0.012 0.3182 0.5225
0.012 1 1
0.0107 0.3061 0.7636
0.0114 0.6046 0.5851
0.012 0.3657 1
0.1128 0.3814 1
0.0101 0.2689 0.2686
0.0096 0.5426 1
0.012 0.5476 0.5
0.012 0.599 1
0.0114 0.2728 0.8616
0.0317 0.373 1
0.0108 0.4036 1
0.0093 0.3096 0.5
0.012 0.349 0.3439
0.012 0.2664 0.5089
0.0109 0.2664 0.5089
0.0299 0.3682 1
0.0071 0.2773 0.5
0.012 1 0.5
0.0098 0.2683 0.2844
0.0101 0.3885 0.3588
0.0432 0.5585 0.5
0.0104 0.2639 0.609
0.0425 0.6072 0.9519
0.0427 0.5976 0.9368
0.012 0.3096 0.5
0.0061 0.3957 1
0.0102 0.4601 0
0.0317 0.373 1
0.0047741 0.5 0.5
0.012 0.2557 0.3345
0.012 0.3203 1
0.0317 0.373 1
0.0931 0.3837 1
0.01 0.3927 0.3927
0.0102 0.2556 0.3615
0.012 0.3657 1
0.012 0.2969 0.3942
0.0114 0.5311 0.5311
0.012 0.3657 1
0.012 0.3675 1
0.0194 0.2771 0.4345
0.012 0.3139 0.0345
0.1249 0.3825 1
0.0097 0.2509 1
0.0113 0.5426 1
0.011 1 0.5
0.0101 0.5588 1
0.012 0.3657 1
0.012 0.2566 1
0.012 0.3189 0.3581
0.011 0.2856 0.307
0.012 0.3691 0.5
0.0099 0.345 0.6183
0.0115 0.3114 1
0.0439 0.5492 0.8611
0.0102 0.5426 0
0.0454 1 0.5
0.012 0.7811 0.7727
0.0116 0.2588 0.2709
0.1126 0.4025 1
0.0098 0.3456 0.5376
0.0116 0.5426 0
0.0294 0.3676 1
0.012 0.3099 1
0.0101 0.2689 0.2686
0.0194 0.2771 0.4345
0.012 0.9071 1
0.0328 1 0.5
0.0105 0.3808 0.3439
0.012 0.2543 1
0.012 0.3187 1
0.0105 0.2662 0.609
0.1265 0.3906 1
0.0204 0.3926 0.4047
0.0116 0.3093 0.3697
0.012 0.3254 0.0828
0.012 0.3657 1
0.1128 0.3814 1
0.0436 1 1
0.0116 0.3657 1
0.0214 0.263 0.4846
0.0329 0.8576 1
0.0531 0.2715 0.3278
0.1158 0.4036 1
0.0111 0.3808 0.3439
0.012 0.2745 1
0.012 0.3934 1
0.0329 0.8576 1
0.012 0.2557 0.3345
0.0116 0.2625 0.31
0.0114 0.3827 0.3809
0.012 0.3267 0.3174
0.0098 0.3057 0.5366
0.0103 0.2786 1
0.012 0.3657 1
0.012 1 0.5
0.1135 0.3983 1
0.0112 0.2841 0.5
0.0542 0.5494 1
0.1123 0.3783 1
0.0097 0.5203 0.4911
0.012 0.3657 1
0.0096 0.267 1
0.1044 0.3795 1
0.012 0.3099 1
0.0099 0.2761 1
0.0102 0.3637 0.5595
0.0097 1 0.5
0.012 0.5296 1
0.012 0.3657 1
0.012 0.3203 1
0.1158 0.4036 1
0.011 0.3048 0.2872
0.0102 0.277 1
0.0109 0.4036 1
0.1139 0.3913 1
0.0099 0.2788 0
0.0112 0.3554 1
0.0102 0.3637 0.5595
0.012 0.3868 1
0.012 0.2971 0.2447
0.012 0.5396 1
0.0436 1 1
0.1396 0.3855 1
0.0097 0.2971 0.2799
0.012 0.3778 1
0.0551 0.7351 1
0.0203 0.3008 0.4155
0.012 1 0.5
0.0102 0.3011 0.5597
0.0321 0.4132 0.6479
0.0082 0.282 0.7922
0.0113 0.2588 0.6877
0.012 0.7791 0.7636
0.0115 0.3568 0.458
0.0099 0.2619 1
0.0103 0.3809 0.3892
0.012 0.6394 1
0.0109 0.2588 1
0.01 0.6394 1
0.0103 0.3934 1
0.012 0.3187 1
0.012 0.8245 1
0.012 0.8147 1
0.0074 0.2841 0.5
0.0441 1 0.5
0.0145 0.2648 0.3968
0.0113 0.3914 0.3797
0.0547 0.5 0.5
0.0097 0.313 0.7858
0.012 0.3657 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

No user comments are available for this gene. Log in to add comments, or register.

Enter your comment

User ()
Gene identifier OVOC1424 (Onchocerca volvulus), Heat shock factor protein 2 homolog
Title for this comment
Comment