Detailed information for compound 305492

Basic information

Technical information
  • TDR Targets ID: 305492
  • Name: methyl 1-(dimethylcarbamoyl)-3-[4-[(2-methyli midazo[4,5-c]pyridin-3-yl)methyl]benzoyl]indo le-4-carboxylate
  • MW: 495.529 | Formula: C28H25N5O4
  • H donors: 0 H acceptors: 5 LogP: 3.53 Rotable bonds: 8
    Rule of 5 violations (Lipinski): 1
  • SMILES: COC(=O)c1cccc2c1c(cn2C(=O)N(C)C)C(=O)c1ccc(cc1)Cn1c(C)nc2c1cncc2
  • InChi: 1S/C28H25N5O4/c1-17-30-22-12-13-29-14-24(22)32(17)15-18-8-10-19(11-9-18)26(34)21-16-33(28(36)31(2)3)23-7-5-6-20(25(21)23)27(35)37-4/h5-14,16H,15H2,1-4H3
  • InChiKey: NWXZGUNKHNSQRC-UHFFFAOYSA-N  

Network

Hover on a compound node to display the structore

Synonyms

  • 1-[dimethylamino(oxo)methyl]-3-[[4-[(2-methyl-3-imidazo[4,5-c]pyridinyl)methyl]phenyl]-oxomethyl]-4-indolecarboxylic acid methyl ester
  • methyl 1-(dimethylcarbamoyl)-3-[4-[(2-methylimidazo[4,5-c]pyridin-3-yl)methyl]phenyl]carbonyl-indole-4-carboxylate
  • 1-(dimethylcarbamoyl)-3-[4-[(2-methylimidazo[4,5-c]pyridin-3-yl)methyl]benzoyl]indole-4-carboxylic acid methyl ester
  • methyl 1-(dimethylcarbamoyl)-3-[4-[(2-methylimidazo[5,4-c]pyridin-3-yl)methyl]benzoyl]indole-4-carboxylate
  • 1-(dimethylamino-oxomethyl)-3-[[4-[(2-methyl-3-imidazo[5,4-c]pyridinyl)methyl]phenyl]-oxomethyl]-4-indolecarboxylic acid methyl ester
  • 1-(dimethylcarbamoyl)-3-[4-[(2-methylimidazo[5,4-c]pyridin-3-yl)methyl]benzoyl]indole-4-carboxylic acid methyl ester
  • methyl 1-(dimethylcarbamoyl)-3-[4-[(2-methylimidazo[5,4-c]pyridin-3-yl)methyl]phenyl]carbonyl-indole-4-carboxylate

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Cavia porcellus Platelet activating factor receptor Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
No druggable targets predicted by orthology data
By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Onchocerca volvulus Platelet activating factor receptor   342 aa 320 aa 24.7 %
Echinococcus granulosus rhodopsin orphan GPCR Platelet activating factor receptor   342 aa 278 aa 16.5 %
Loa Loa (eye worm) hypothetical protein Platelet activating factor receptor   342 aa 355 aa 22.5 %
Schistosoma japonicum ko:K04134 cholinergic receptor, invertebrate, putative Platelet activating factor receptor   342 aa 283 aa 20.5 %
Schistosoma mansoni neuropeptide receptor Platelet activating factor receptor   342 aa 292 aa 20.5 %
Schistosoma mansoni peptide (allatostatin)-like receptor Platelet activating factor receptor   342 aa 344 aa 25.6 %
Schistosoma mansoni opsin-like receptor Platelet activating factor receptor   342 aa 318 aa 21.7 %
Schistosoma mansoni neuropeptide F-like receptor Platelet activating factor receptor   342 aa 325 aa 22.2 %
Onchocerca volvulus Platelet activating factor receptor   342 aa 394 aa 20.3 %
Echinococcus multilocularis allatostatin A receptor Platelet activating factor receptor   342 aa 334 aa 23.4 %
Onchocerca volvulus Platelet activating factor receptor   342 aa 295 aa 21.7 %
Schistosoma mansoni neuropeptide receptor Platelet activating factor receptor   342 aa 338 aa 24.9 %
Onchocerca volvulus Platelet activating factor receptor   342 aa 300 aa 21.0 %
Echinococcus multilocularis rhodopsin orphan GPCR Platelet activating factor receptor   342 aa 278 aa 16.5 %
Onchocerca volvulus Platelet activating factor receptor   342 aa 327 aa 21.7 %
Echinococcus granulosus neuropeptide receptor Platelet activating factor receptor   342 aa 304 aa 23.4 %
Echinococcus multilocularis g-protein coupled receptor Platelet activating factor receptor   342 aa 351 aa 22.5 %
Onchocerca volvulus Platelet activating factor receptor   342 aa 321 aa 19.6 %
Onchocerca volvulus Cyclin-dependent kinase 20 homolog Platelet activating factor receptor   342 aa 383 aa 23.8 %
Echinococcus granulosus tachykinin peptides receptor 99D Platelet activating factor receptor   342 aa 314 aa 21.3 %
Echinococcus granulosus g-protein coupled receptor Platelet activating factor receptor   342 aa 352 aa 22.2 %
Echinococcus granulosus allatostatin A receptor Platelet activating factor receptor   342 aa 334 aa 22.8 %
Onchocerca volvulus Platelet activating factor receptor   342 aa 342 aa 19.6 %
Schistosoma japonicum ko:K04209 neuropeptide Y receptor, invertebrate, putative Platelet activating factor receptor   342 aa 340 aa 23.8 %
Onchocerca volvulus Platelet activating factor receptor   342 aa 319 aa 21.6 %
Echinococcus multilocularis neuropeptide receptor Platelet activating factor receptor   342 aa 303 aa 23.1 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Loa Loa (eye worm) hypothetical protein 0.0015 1 1
Onchocerca volvulus Steroid hormone receptor family member cnr14 homolog 0.0015 1 0.5
Loa Loa (eye worm) nuclear Hormone Receptor family member 0.0015 1 1
Echinococcus multilocularis FTZ F1 nuclear receptor protein 0.0015 1 1
Echinococcus multilocularis Nuclear hormone receptor family member nhr 41 0.0015 1 1
Echinococcus granulosus hepatocyte nuclear factor 4 alpha 0.0015 1 1
Echinococcus multilocularis COUP TF:Svp nuclear hormone receptor 0.0015 1 1
Loa Loa (eye worm) hypothetical protein 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-3 0.0015 1 1
Brugia malayi Steroid receptor seven-up type 2 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-25 0.0015 1 1
Schistosoma mansoni photoreceptor-specific nuclear receptor related 0.0015 1 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-31 0.0015 1 1
Echinococcus granulosus Nuclear hormone receptor family member nhr 41 0.0015 1 1
Echinococcus granulosus ecdysone induced protein 78C 0.0015 1 1
Schistosoma mansoni FTZ-F1 nuclear receptor-like protein 0.0015 1 1
Brugia malayi nuclear hormone receptor 0.0015 1 1
Loa Loa (eye worm) hypothetical protein 0.0015 1 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-1 0.0015 1 1
Echinococcus multilocularis thyroid hormone receptor alpha 0.0015 1 1
Echinococcus multilocularis FTZ F1 alpha 0.0015 1 1
Loa Loa (eye worm) hypothetical protein 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-14 0.0015 1 1
Echinococcus granulosus nuclear receptor 2DBD gamma 0.0015 1 1
Echinococcus granulosus nuclear receptor 2DBD gamma 0.0015 1 1
Loa Loa (eye worm) steroid hormone receptor 0.0015 1 1
Loa Loa (eye worm) hypothetical protein 0.0015 1 1
Brugia malayi nuclear receptor NHR-88 0.0015 1 1
Echinococcus multilocularis nuclear receptor 2DBD gamma 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-40 0.0015 1 1
Schistosoma mansoni thyroid hormone receptor 0.0015 1 1
Schistosoma mansoni Tr4/Tr2 (homologue) 0.0015 1 1
Echinococcus granulosus retinoic acid receptor rxr beta a 0.0015 1 1
Echinococcus granulosus FTZ F1 nuclear receptor protein 0.0015 1 1
Onchocerca volvulus 0.0015 1 0.5
Brugia malayi Ligand-binding domain of nuclear hormone receptor family protein 0.0015 1 1
Schistosoma mansoni steroid hormone receptor ad4bp 0.0015 1 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-41 0.0015 1 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-49 0.0015 1 1
Schistosoma mansoni nuclear hormone receptor 0.0015 1 1
Schistosoma mansoni nuclear receptor 2DBD-gamma 0.0015 1 1
Brugia malayi Nuclear hormone receptor-like 1 0.0015 1 1
Echinococcus granulosus COUP TF:Svp nuclear hormone receptor 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-41 0.0015 1 1
Echinococcus multilocularis nuclear receptor 2DBD gamma 0.0015 1 1
Schistosoma mansoni RAR-like nuclear receptor 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-25 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-19 0.0015 1 1
Schistosoma mansoni retinoid-x-receptor (RXR) 0.0015 1 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-14 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-31 0.0015 1 1
Loa Loa (eye worm) hypothetical protein 0.0015 1 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-40 0.0015 1 1
Brugia malayi Ligand-binding domain of nuclear hormone receptor family protein 0.0015 1 1
Loa Loa (eye worm) hypothetical protein 0.0015 1 1
Echinococcus multilocularis ecdysone induced protein 78C 0.0015 1 1
Schistosoma mansoni nuclear hormone receptor nor-1/nor-2 0.0015 1 1
Schistosoma mansoni retinoic acid receptor RXR 0.0015 1 1
Onchocerca volvulus Protein ultraspiracle homolog 0.0015 1 0.5
Brugia malayi steroid hormone receptor 0.0015 1 1
Echinococcus multilocularis hepatocyte nuclear factor 4 alpha 0.0015 1 1
Schistosoma mansoni thyroid hormone receptor 0.0015 1 1
Echinococcus granulosus FTZ F1 alpha 0.0015 1 1
Brugia malayi photoreceptor-specific nuclear receptor 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-1 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-49 0.0015 1 1
Loa Loa (eye worm) hypothetical protein 0.0015 1 1
Brugia malayi Nuclear hormone receptor family member nhr-19 0.0015 1 1
Schistosoma mansoni coup transcription factor 0.0015 1 1
Onchocerca volvulus Bile acid receptor homolog 0.0015 1 0.5

Activities

Activity type Activity value Assay description Source Reference
ED50 (functional) = 0.24 mg kg-1 Ability to block the effect of exogenously administered PAF upon intravenous administration in PAF-induced rat skin permeability assay ChEMBL. 9438024
ED50 (functional) = 0.24 mg kg-1 Ability to block the effect of exogenously administered PAF upon intravenous administration in PAF-induced rat skin permeability assay ChEMBL. 9438024
Ki (binding) = 16 nM Binding potency against Platelet activating factor (PAF) receptor using [3H]-C18-PAF as radioligand on rabbit platelet membranes ChEMBL. 9438024
Ki (binding) = 16 nM Binding potency against Platelet activating factor (PAF) receptor using [3H]-C18-PAF as radioligand on rabbit platelet membranes ChEMBL. 9438024

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this compound, please enter them in a user comment (below) or Contact us.