Detailed information for compound 160190

Basic information

Technical information
  • TDR Targets ID: 160190
  • Name: 1-(1,3-benzodioxol-5-yl)-4-[4-[(2,5-difluorop henyl)methyl]piperazin-1-yl]cyclohexan-1-ol
  • MW: 430.488 | Formula: C24H28F2N2O3
  • H donors: 1 H acceptors: 1 LogP: 3.52 Rotable bonds: 4
    Rule of 5 violations (Lipinski): 1
  • SMILES: Fc1ccc(c(c1)CN1CCN(CC1)C1CCC(CC1)(O)c1ccc2c(c1)OCO2)F
  • InChi: 1S/C24H28F2N2O3/c25-19-2-3-21(26)17(13-19)15-27-9-11-28(12-10-27)20-5-7-24(29,8-6-20)18-1-4-22-23(14-18)31-16-30-22/h1-4,13-14,20,29H,5-12,15-16H2
  • InChiKey: JYGAJCKXKOAJLG-UHFFFAOYSA-N  

Network

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Synonyms

  • 1-(1,3-benzodioxol-5-yl)-4-[4-[(2,5-difluorophenyl)methyl]piperazin-1-yl]cyclohexanol
  • 1-(1,3-benzodioxol-5-yl)-4-[4-[(2,5-difluorophenyl)methyl]-1-piperazinyl]cyclohexanol
  • 1-(1,3-benzodioxol-5-yl)-4-[4-(2,5-difluorobenzyl)piperazino]cyclohexanol
  • 1-(1,3-benzodioxol-5-yl)-4-[4-[(2,5-difluorophenyl)methyl]-1-piperazinyl]-1-cyclohexanol
  • 1-(1,3-benzodioxol-5-yl)-4-[4-(2,5-difluorobenzyl)piperazin-1-yl]cyclohexan-1-ol

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Rattus norvegicus Serotonin 1a (5-HT1a) receptor Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Schistosoma mansoni biogenic amine (5HT) receptor Get druggable targets OG5_133249 All targets in OG5_133249
Echinococcus multilocularis serotonin receptor Get druggable targets OG5_133249 All targets in OG5_133249
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_133249 All targets in OG5_133249
Schistosoma japonicum expressed protein Get druggable targets OG5_133249 All targets in OG5_133249
Echinococcus granulosus biogenic amine 5HT receptor Get druggable targets OG5_133249 All targets in OG5_133249
Schistosoma japonicum ko:K04153 5-hydroxytryptamine (serotonin) receptor 1A, putative Get druggable targets OG5_133249 All targets in OG5_133249
Schistosoma japonicum Octopamine receptor, putative Get druggable targets OG5_133249 All targets in OG5_133249
Echinococcus multilocularis serotonin receptor Get druggable targets OG5_133249 All targets in OG5_133249
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_133249 All targets in OG5_133249

By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Echinococcus multilocularis g protein coupled receptor Serotonin 1a (5-HT1a) receptor   422 aa 433 aa 22.4 %
Loa Loa (eye worm) TYRA-2 protein Serotonin 1a (5-HT1a) receptor   422 aa 491 aa 27.3 %
Echinococcus multilocularis neuropeptides capa receptor Serotonin 1a (5-HT1a) receptor   422 aa 430 aa 20.0 %
Onchocerca volvulus Serotonin 1a (5-HT1a) receptor   422 aa 390 aa 33.6 %
Schistosoma japonicum ko:K04145 dopamine receptor D2, putative Serotonin 1a (5-HT1a) receptor   422 aa 410 aa 27.8 %
Echinococcus granulosus alpha 1A adrenergic receptor Serotonin 1a (5-HT1a) receptor   422 aa 452 aa 21.0 %
Schistosoma japonicum ko:K04207 neuropeptide Y receptor Y5, putative Serotonin 1a (5-HT1a) receptor   422 aa 339 aa 23.0 %
Schistosoma mansoni amine GPCR Serotonin 1a (5-HT1a) receptor   422 aa 440 aa 31.6 %
Echinococcus granulosus g protein coupled receptor Serotonin 1a (5-HT1a) receptor   422 aa 432 aa 24.3 %
Echinococcus multilocularis g protein coupled receptor Serotonin 1a (5-HT1a) receptor   422 aa 432 aa 23.6 %
Schistosoma japonicum ko:K04136 adrenergic receptor, alpha 1b, putative Serotonin 1a (5-HT1a) receptor   422 aa 444 aa 29.3 %
Echinococcus granulosus orexin receptor type 2 Serotonin 1a (5-HT1a) receptor   422 aa 369 aa 22.0 %
Onchocerca volvulus Glycoprotein hormone beta 5 homolog Serotonin 1a (5-HT1a) receptor   422 aa 477 aa 24.3 %
Onchocerca volvulus Mitochondrial inner membrane protein homolog Serotonin 1a (5-HT1a) receptor   422 aa 383 aa 30.5 %
Echinococcus granulosus g protein coupled receptor Serotonin 1a (5-HT1a) receptor   422 aa 432 aa 23.4 %
Onchocerca volvulus Serotonin 1a (5-HT1a) receptor   422 aa 426 aa 29.6 %
Schistosoma mansoni peptide (FMRFamide/neurokinin-3)-like receptor Serotonin 1a (5-HT1a) receptor   422 aa 350 aa 20.6 %
Onchocerca volvulus Serotonin 1a (5-HT1a) receptor   422 aa 436 aa 23.9 %
Onchocerca volvulus Serotonin 1a (5-HT1a) receptor   422 aa 407 aa 23.3 %
Schistosoma japonicum IPR000276,Rhodopsin-like GPCR superfamily,domain-containing Serotonin 1a (5-HT1a) receptor   422 aa 392 aa 20.7 %
Schistosoma japonicum ko:K04135 adrenergic receptor, alpha 1a, putative Serotonin 1a (5-HT1a) receptor   422 aa 448 aa 29.7 %
Schistosoma japonicum Octopamine receptor 1, putative Serotonin 1a (5-HT1a) receptor   422 aa 424 aa 24.3 %
Loa Loa (eye worm) hypothetical protein Serotonin 1a (5-HT1a) receptor   422 aa 388 aa 26.5 %
Echinococcus multilocularis orexin receptor type 2 Serotonin 1a (5-HT1a) receptor   422 aa 369 aa 22.2 %
Schistosoma japonicum IPR000276,Rhodopsin-like GPCR superfamily,domain-containing Serotonin 1a (5-HT1a) receptor   422 aa 417 aa 21.1 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Toxoplasma gondii SWIB/MDM2 domain-containing protein 0.0342 1 1
Trypanosoma brucei Zn-finger in Ran binding protein and others/FYVE zinc finger, putative 0.0122 0 0.5
Trypanosoma cruzi hypothetical protein, conserved 0.0122 0 0.5
Trypanosoma brucei mitochondrial RNA binding complex 1 subunit 0.0122 0 0.5
Trypanosoma cruzi Zn-finger in Ran binding protein and others, putative 0.0122 0 0.5
Schistosoma mansoni biogenic amine (5HT) receptor 0.015 0.1284 0.1284
Echinococcus granulosus SWI:SNF matrix associated 0.0342 1 1
Trypanosoma cruzi Zn-finger in Ran binding protein and others, putative 0.0122 0 0.5
Echinococcus multilocularis serotonin receptor 0.015 0.1284 0.1284
Echinococcus multilocularis SWI:SNF matrix associated 0.0342 1 1
Echinococcus granulosus biogenic amine 5HT receptor 0.015 0.1284 0.1284
Trypanosoma cruzi hypothetical protein, conserved 0.0122 0 0.5
Loa Loa (eye worm) hypothetical protein 0.015 0.1284 0.1284
Echinococcus multilocularis Upstream activation factor subunit UAF30 0.0342 1 1
Loa Loa (eye worm) brahma associated protein 0.0342 1 1
Schistosoma mansoni hypothetical protein 0.0342 1 1
Leishmania major hypothetical protein, conserved 0.0122 0 0.5
Trypanosoma brucei hypothetical protein, conserved 0.0122 0 0.5
Leishmania major hypothetical protein, conserved 0.0122 0 0.5
Leishmania major hypothetical protein, conserved 0.0122 0 0.5
Toxoplasma gondii DNA topoisomerase domain-containing protein 0.0342 1 1
Leishmania major hypothetical protein, conserved 0.0122 0 0.5
Trypanosoma cruzi mitochondrial RNA binding complex 1 subunit, putative 0.0122 0 0.5
Echinococcus multilocularis serotonin receptor 0.015 0.1284 0.1284
Echinococcus multilocularis SWI:SNF matrix associated 0.0342 1 1
Brugia malayi SWIB/MDM2 domain containing protein 0.0342 1 1
Leishmania major hypothetical protein, conserved 0.0122 0 0.5
Schistosoma mansoni hypothetical protein 0.0342 1 1
Loa Loa (eye worm) hypothetical protein 0.015 0.1284 0.1284
Trypanosoma cruzi WLM domain containing protein, putative 0.0122 0 0.5
Trypanosoma cruzi Zn-finger in Ran binding protein and others/FYVE zinc finger, putative 0.0122 0 0.5
Trypanosoma cruzi mitochondrial RNA binding complex 1 subunit, putative 0.0122 0 0.5
Schistosoma mansoni brg-1 associated factor 0.0342 1 1
Loa Loa (eye worm) SWIB/MDM2 domain-containing protein 0.0342 1 1
Plasmodium vivax hypothetical protein, conserved 0.0342 1 0.5
Trypanosoma cruzi WLM domain containing protein, putative 0.0122 0 0.5
Echinococcus granulosus Upstream activation factor subunit UAF30 0.0342 1 1
Echinococcus multilocularis SWI:SNF matrix associated 0.0342 1 1
Trypanosoma cruzi hypothetical protein, conserved 0.0122 0 0.5
Chlamydia trachomatis SWIB complex protein 0.0342 1 0.5
Plasmodium falciparum SWIB/MDM2 domain-containing protein 0.0342 1 1
Schistosoma mansoni hypothetical protein 0.0342 1 1
Trypanosoma brucei hypothetical protein, conserved 0.0122 0 0.5
Brugia malayi brahma associated protein 60 kDa 0.0342 1 1
Plasmodium falciparum SWIB/MDM2 domain-containing protein 0.0342 1 1
Onchocerca volvulus 0.0342 1 1
Chlamydia trachomatis DNA topoisomerase I 0.0342 1 0.5
Plasmodium vivax SWIB/MDM2 domain-containing protein, putative 0.0342 1 0.5
Trichomonas vaginalis conserved hypothetical protein 0.0342 1 0.5

Activities

Activity type Activity value Assay description Source Reference
IC50 (binding) = 2.6 nM Inhibition of the 5-hydroxytryptamine 1A receptor in rat dorsal raphe ChEMBL. 12482441
IC50 (binding) = 2.6 nM Inhibition of the 5-hydroxytryptamine 1A receptor in rat dorsal raphe ChEMBL. 12482441

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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