pI: 7.2021 |
Length (AA): 2485 |
MW (Da): 293768 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 30 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
1443 | 2043 | 1zro (A) | 16 | 594 | 19.00 | 0.000000000086 | 0.93 | -0.03 | 1.48 |
2409 | 2869 | 1fmk () | 94 | 531 | 17.00 | 0 | 1 | 0.17 | 1.02 |
2441 | 2908 | 1omw (A) | 29 | 536 | 18.00 | 0 | 1 | 0.28 | 0.57 |
2527 | 2940 | 2etr (A) | 8 | 404 | 19.00 | 0 | 1 | 0 | 0.29 |
2618 | 2851 | 1fgk (A) | 505 | 753 | 23.00 | 0.0000000000078 | 1 | 0.33 | -1.25 |
341 | 705 | 4wat (A) | 148 | 511 | 28.00 | 0.13 | 0.1 | 0.0281813 | 1.41 |
834 | 1517 | 1pwu (A) | 110 | 759 | 22.00 | 0.72 | 0.97 | 0.230552 | 1.14 |
1058 | 1414 | 2vk9 (A) | 24 | 380 | 24.00 | 0.14 | 0.94 | 0.162962 | 1.07 |
1385 | 1706 | 4o87 (A) | 31 | 313 | 28.00 | 0.28 | 0.1 | 0.168877 | 0.63 |
1987 | 2432 | 3v5w (A) | 86 | 540 | 20.00 | 0 | 1 | 0.324077 | 0.35 |
2006 | 2388 | 3pfq (A) | 203 | 633 | 21.00 | 0.00000000075 | 1 | 0.247325 | 0.33 |
2082 | 2485 | 4kik (B) | 1 | 480 | 21.00 | 0.00015 | 1 | 0.0557755 | 0.73 |
2083 | 2390 | 1u5q (A) | 17 | 319 | 25.00 | 0.000000021 | 1 | 0.366144 | -0.66 |
2090 | 2352 | 4otd (A) | 614 | 880 | 24.00 | 0 | 1 | 0.439435 | -0.94 |
2115 | 2465 | 4rgj (A) | 91 | 455 | 26.00 | 0.0000000041 | 1 | 0.288447 | -0.11 |
2123 | 2416 | 4mvf (A) | 92 | 372 | 35.00 | 0.0000000043 | 1 | 0.10061 | 1.3 |
2128 | 2372 | 4lg4 (D) | 47 | 291 | 38.00 | 0 | 1 | 0.432892 | -0.32 |
88 | 444 | 4hte (A) | 300 | 571 | 28.00 | 0.74 | 0.27 | -0.0862689 | 1.39 |
348 | 713 | 4wat (A) | 148 | 511 | 29.00 | 0.27 | 0.14 | 0.045347 | 1.28 |
842 | 1529 | 1pwu (A) | 110 | 759 | 21.00 | 0.93 | 0.95 | 0.254716 | 1.29 |
1066 | 1349 | 2vk9 (A) | 24 | 294 | 26.00 | 0.26 | 0.92 | 0.221402 | 0.77 |
1919 | 2371 | 1fmk (A) | 92 | 531 | 15.00 | 0.0000034 | 1 | 0.194801 | 0.26 |
1976 | 2148 | 4tql (A) | 64 | 227 | 23.00 | 0.75 | 0.07 | 0.269506 | -1.14 |
2009 | 2436 | 3v5w (A) | 97 | 540 | 20.00 | 0 | 1 | 0.325957 | 0.25 |
2086 | 2489 | 4kik (B) | 1 | 480 | 21.00 | 0.00018 | 1 | 0.0501142 | 0.81 |
2094 | 2356 | 4otd (A) | 614 | 880 | 24.00 | 0 | 1 | 0.438665 | -0.94 |
2101 | 2382 | 3ckw (A) | 9 | 282 | 37.00 | 0 | 1 | 0.477299 | -0.45 |
2119 | 2469 | 4rgj (A) | 91 | 455 | 26.00 | 0.0000000077 | 1 | 0.29982 | -0.2 |
2124 | 2384 | 2bdw (A) | 39 | 298 | 24.00 | 0 | 1 | 0.457861 | -0.74 |
2132 | 2376 | 4lg4 (D) | 47 | 291 | 38.00 | 0 | 1 | 0.432733 | -0.32 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Upper 80-100% percentile | gametocyte, Sporozoite, Female Gametocyte, Male Gametocyte. | PlasmoDB Zanghi G Lasonder E |
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Upper 60-80% percentile | merozoite, sporozoite, late schizont. | PlasmoDB |
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Mid 40-60% percentile | early schizont. | PlasmoDB |
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Lower 20-40% percentile | intra-erythrocytic - 0 hs, intra-erythrocytic - 8 hs, intra-erythrocytic - 40 hs, intra-erythrocytic - 48 hs, late trophozoite, Oocyst, Ring. | Otto TD PlasmoDB Zanghi G |
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Lower 0-20% percentile | intra-erythrocytic - 16 hs, intra-erythrocytic - 24 hs, intra-erythrocytic - 32 hs. | Otto TD |
Zanghi G | A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection. |
PlasmoDB | Data on upregulation of P. falciparum genes in different life cycle stages, combined from several microarray experiments available in PlasmoDB |
Otto TD | New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq. |
Lasonder E | Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes. Molecular insight into sex-specific processes and translational repression. |
Ortholog group members (OG5_127277)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT1G53165 | map 4 kinase alpha1 |
Arabidopsis thaliana | AT3G15220 | putative protein kinase |
Candida albicans | CaO19.7821 | Serine/threonine protein kinase |
Candida albicans | CaO19.191 | Serine/threonine protein kinase |
Caenorhabditis elegans | CELE_T19A5.2 | Protein GCK-1, isoform A |
Dictyostelium discoideum | DDB_G0286359 | STE20 family protein kinase |
Dictyostelium discoideum | DDB_G0267978 | MST subfamily kinase |
Drosophila melanogaster | Dmel_CG5169 | Germinal centre kinase III |
Echinococcus granulosus | EgrG_000423200 | serine threonine protein kinase |
Entamoeba histolytica | EHI_023610 | protein kinase, putative |
Echinococcus multilocularis | EmuJ_000423200 | serine threonine protein kinase |
Homo sapiens | ENSG00000102572 | serine/threonine kinase 24 |
Homo sapiens | ENSG00000134602 | serine/threonine protein kinase 26 |
Homo sapiens | ENSG00000115694 | serine/threonine kinase 25 |
Loa Loa (eye worm) | LOAG_11902 | STE/STE20/YSK protein kinase |
Mus musculus | 70415 | serine/threonine kinase 26 |
Mus musculus | ENSMUSG00000063410 | serine/threonine kinase 24 |
Mus musculus | 59041 | serine/threonine kinase 25 (yeast) |
Oryza sativa | 4343333 | Os07g0507300 |
Plasmodium falciparum | PF3D7_0203100 | protein kinase, putative |
Plasmodium vivax | PVX_003590 | serine/threonine-specific protein kinase, putative |
Saccharomyces cerevisiae | YDR523C | Sps1p |
Saccharomyces cerevisiae | YHR102W | Kic1p |
Schistosoma japonicum | Sjp_0074710 | ko:K08839 serine/threonine kinase 25, putative |
Schistosoma mansoni | Smp_096640 | serine/threonine protein kinase |
Schmidtea mediterranea | mk4.001445.05 | |
Schmidtea mediterranea | mk4.002264.12 | |
Schmidtea mediterranea | mk4.007384.01 | Mitogen-activated protein kinase kinase kinase 8 |
Schmidtea mediterranea | mk4.001739.09 | |
Trichomonas vaginalis | TVAG_337440 | STE family protein kinase |
Trichomonas vaginalis | TVAG_004100 | STE family protein kinase |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
CELE_T19A5.2 | Caenorhabditis elegans | sterile | wormbase |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Druggability index (range: 0 to 1): 0.5
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Homo sapiens | serine/threonine kinase 24 | Compounds | References |
Homo sapiens | serine/threonine protein kinase 26 | Compounds | References |
Homo sapiens | serine/threonine kinase 25 | Compounds | References |
Species | Target | Length | Identity | Alignment span | Linked Drugs | Reference |
---|---|---|---|---|---|---|
Oryctolagus cuniculus | Cyclin-dependent kinase 4 | 189 aa | 27.4% | 168 aa | Compounds | References |