Detailed information for compound 1416083

Basic information

Technical information
  • TDR Targets ID: 1416083
  • Name: ethyl 4-methyl-2-oxo-6-thiophen-3-yl-3,6-dihy dro-1H-pyrimidine-5-carboxylate
  • MW: 266.316 | Formula: C12H14N2O3S
  • H donors: 2 H acceptors: 2 LogP: 1.06 Rotable bonds: 4
    Rule of 5 violations (Lipinski): 1
  • SMILES: CCOC(=O)C1=C(C)NC(=O)NC1c1cscc1
  • InChi: 1S/C12H14N2O3S/c1-3-17-11(15)9-7(2)13-12(16)14-10(9)8-4-5-18-6-8/h4-6,10H,3H2,1-2H3,(H2,13,14,16)
  • InChiKey: YDPAVIZFYHAEHR-UHFFFAOYSA-N  

Network

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Synonyms

  • ethyl 4-methyl-2-oxo-6-(3-thienyl)-3,6-dihydro-1H-pyrimidine-5-carboxylate
  • 4-methyl-2-oxo-6-(3-thienyl)-3,6-dihydro-1H-pyrimidine-5-carboxylic acid ethyl ester
  • 2-keto-4-methyl-6-(3-thienyl)-3,6-dihydro-1H-pyrimidine-5-carboxylic acid ethyl ester
  • MLS000533377
  • Oprea1_260111
  • CBMicro_049644
  • BIM-0049671.P001
  • SMR000140775
  • ethyl 6-methyl-2-oxo-4-(3-thienyl)-1,2,3,4-tetrahydro-5-pyrimidinecarboxylate

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens adenosine A3 receptor Starlite/ChEMBL References
Homo sapiens SMAD family member 2 Starlite/ChEMBL No references
Homo sapiens adenosine A1 receptor Starlite/ChEMBL References
Escherichia coli penicillin-binding protein Starlite/ChEMBL No references
Homo sapiens adenosine A2a receptor Starlite/ChEMBL References
Homo sapiens adenosine A2b receptor Starlite/ChEMBL References
Homo sapiens GNAS complex locus Starlite/ChEMBL No references

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) Get druggable targets OG5_131088 All targets in OG5_131088
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) Get druggable targets OG5_131088 All targets in OG5_131088
Echinococcus granulosus guanine nucleotide binding protein Gs subunit Get druggable targets OG5_131088 All targets in OG5_131088
Schistosoma japonicum ko:K04632 guanine nucleotide binding protein (G protein), alpha stimulating, putative Get druggable targets OG5_131088 All targets in OG5_131088
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) Get druggable targets OG5_131088 All targets in OG5_131088
Echinococcus granulosus guanine nucleotide binding protein Gs subunit Get druggable targets OG5_131088 All targets in OG5_131088
Loa Loa (eye worm) GTP-binding regulatory protein Gs alpha-S chain Get druggable targets OG5_131088 All targets in OG5_131088
Mycobacterium tuberculosis Possible penicillin-binding protein Get druggable targets OG5_149948 All targets in OG5_149948
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit Get druggable targets OG5_131088 All targets in OG5_131088
Brugia malayi GTP-binding regulatory protein Gs alpha-S chain, putative Get druggable targets OG5_131088 All targets in OG5_131088
Loa Loa (eye worm) MH2 domain-containing protein Get druggable targets OG5_131716 All targets in OG5_131716
Loa Loa (eye worm) transcription factor SMAD2 Get druggable targets OG5_131716 All targets in OG5_131716
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit Get druggable targets OG5_131088 All targets in OG5_131088
Brugia malayi MH2 domain containing protein Get druggable targets OG5_131716 All targets in OG5_131716

By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Brugia malayi follicle stimulating hormone receptor adenosine A2a receptor 412 aa 336 aa 22.3 %
Brugia malayi hypothetical protein adenosine A1 receptor 326 aa 305 aa 21.0 %
Brugia malayi MH2 domain containing protein SMAD family member 2 467 aa 405 aa 31.6 %
Schistosoma mansoni GTP-binding protein alpha subunit gna GNAS complex locus 394 aa 450 aa 28.7 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Trypanosoma cruzi ISWI complex protein 0.0031 0.0059 0.0872
Loa Loa (eye worm) hypothetical protein 0.0043 0.0157 0.0117
Plasmodium vivax FAD-dependent glycerol-3-phosphate dehydrogenase, putative 0.0113 0.0678 1
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0092 0.0523 0.238
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0092 0.0523 0.238
Loa Loa (eye worm) transcription factor SMAD2 0.0144 0.0913 0.0877
Brugia malayi beta-lactamase family protein 0.0043 0.0157 0.1278
Echinococcus multilocularis FAD dependent oxidoreductase domain containing protein 0.0113 0.0678 0.314
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0092 0.0523 0.238
Echinococcus granulosus glycerol 3 phosphate dehydrogenase 0.0113 0.0678 0.314
Mycobacterium ulcerans glycerol-3-phosphate dehydrogenase 0.0113 0.0678 0.0529
Mycobacterium ulcerans D-amino acid oxidase Aao 0.1353 1 1
Schistosoma mansoni family S12 unassigned peptidase (S12 family) 0.0043 0.0157 0.0117
Echinococcus granulosus FAD dependent oxidoreductase domain containing protein 0.0113 0.0678 0.314
Loa Loa (eye worm) hypothetical protein 0.0141 0.089 0.0853
Schistosoma mansoni methyl-cpg binding protein mbd 0.0034 0.0085 0.0046
Echinococcus granulosus bromodomain adjacent to zinc finger domain 0.0119 0.0725 0.3372
Toxoplasma gondii FAD-dependent glycerol-3-phosphate dehydrogenase 0.0113 0.0678 1
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0092 0.0523 0.0485
Trypanosoma brucei L-2-hydroxyglutarate dehydrogenase, mitochondrial, putative 0.0113 0.0678 1
Trichomonas vaginalis esterase, putative 0.0043 0.0157 1
Leishmania major glycerol-3-phosphate dehydrogenase-like protein 0.0113 0.0678 1
Trichomonas vaginalis D-aminoacylase, putative 0.0043 0.0157 1
Echinococcus granulosus zinc finger protein 0.0039 0.0123 0.0411
Echinococcus granulosus bromodomain adjacent to zinc finger domain 0.0072 0.0368 0.1618
Brugia malayi Bromodomain containing protein 0.0076 0.0404 0.3983
Loa Loa (eye worm) beta-LACTamase domain containing family member 0.0043 0.0157 0.0117
Schistosoma mansoni hypothetical protein 0.0041 0.0139 0.01
Loa Loa (eye worm) hypothetical protein 0.0113 0.0678 0.064
Trypanosoma cruzi FAD dependent oxidoreductase, putative 0.0113 0.0678 1
Leishmania major hypothetical protein, conserved 0.0113 0.0678 1
Trypanosoma brucei FAD dependent oxidoreductase, putative 0.0113 0.0678 1
Echinococcus multilocularis glycerol 3 phosphate dehydrogenase 0.0113 0.0678 0.314
Toxoplasma gondii ABC1 family protein 0.0043 0.0157 0.1832
Schistosoma mansoni ATP:guanidino kinase (Smc74) 0.0113 0.0678 0.064
Mycobacterium ulcerans D-amino acid oxidase Aao 0.0113 0.0678 0.0529
Loa Loa (eye worm) hypothetical protein 0.0085 0.0469 0.0431
Plasmodium vivax hypothetical protein, conserved 0.0043 0.0157 0.1832
Trypanosoma brucei ISWI complex protein 0.0031 0.0059 0.0304
Brugia malayi dimethylglycine dehydrogenase, mitochondrial precursor, putative 0.0113 0.0678 0.6977
Loa Loa (eye worm) hypothetical protein 0.0043 0.0157 0.0117
Onchocerca volvulus Putative fad oxidoreductase 0.0113 0.0678 1
Schistosoma mansoni histone-lysine n-methyltransferase setb1 0.0034 0.0085 0.0046
Schistosoma mansoni zinc finger protein 0.0031 0.0059 0.0019
Loa Loa (eye worm) hypothetical protein 0.0034 0.0085 0.0046
Loa Loa (eye worm) hypothetical protein 0.0113 0.0678 0.064
Mycobacterium leprae Possible thiamine biosynthesis oxidoreductase ThiO 0.0113 0.0678 0.0529
Echinococcus granulosus beta LACTamase domain containing family member 0.0043 0.0157 0.0575
Entamoeba histolytica anaerobic glycerol-3-phosphate dehydrogenase subunit A, putative 0.0113 0.0678 1
Brugia malayi pyruvate dehydrogenase phosphatase regulatory subunit precursor 0.0113 0.0678 0.6977
Echinococcus multilocularis bromodomain adjacent to zinc finger domain 0.0072 0.0368 0.1618
Trypanosoma cruzi glycerol-3-phosphate dehydrogenase (FAD-dependent), putative 0.0113 0.0678 1
Echinococcus granulosus methyl CpG binding domain protein 2 0.0034 0.0085 0.0225
Trypanosoma brucei hypothetical protein, conserved 0.0043 0.0157 0.1832
Leishmania major hypothetical protein, conserved 0.0043 0.0157 0.231
Brugia malayi PHD-finger family protein 0.005 0.0203 0.1788
Echinococcus multilocularis snurportin 1 0.0298 0.2071 1
Trichomonas vaginalis penicillin-binding protein, putative 0.0043 0.0157 1
Brugia malayi beta-lactamase 0.0043 0.0157 0.1278
Mycobacterium ulcerans thiamine biosynthesis oxidoreductase ThiO 0.0113 0.0678 0.0529
Mycobacterium ulcerans glycerol-3-phosphate dehydrogenase GlpD2 0.0113 0.0678 0.0529
Brugia malayi MH2 domain containing protein 0.0144 0.0913 0.9555
Loa Loa (eye worm) hypothetical protein 0.0043 0.0157 0.0117
Schistosoma mansoni d-amino acid oxidase 0.1353 1 1
Chlamydia trachomatis D-amino acid dehydrogenase 0.0113 0.0678 0.5
Schistosoma mansoni hypothetical protein 0.0031 0.0059 0.0019
Trypanosoma brucei glycerol-3-phosphate dehydrogenase (FAD-dependent), putative 0.0113 0.0678 1
Trypanosoma brucei glycerol-3-phosphate dehydrogenase (FAD-dependent), mitochondrial 0.0113 0.0678 1
Brugia malayi RNA, U transporter 1 0.0079 0.0427 0.4234
Echinococcus granulosus fetal alzheimer antigen falz 0.0045 0.0168 0.063
Loa Loa (eye worm) GTP-binding regulatory protein Gs alpha-S chain 0.0092 0.0523 0.0485
Schistosoma mansoni methyl-cpg binding protein mbd 0.0034 0.0085 0.0046
Schistosoma mansoni histone-lysine n-methyltransferase setb1 0.0034 0.0085 0.0046
Loa Loa (eye worm) hypothetical protein 0.0081 0.044 0.0402
Trichomonas vaginalis penicillin-binding protein, putative 0.0043 0.0157 1
Schistosoma mansoni fad oxidoreductase 0.0113 0.0678 0.064
Echinococcus multilocularis bromodomain adjacent to zinc finger domain 0.0119 0.0725 0.3372
Onchocerca volvulus Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial homolog 0.0113 0.0678 1
Giardia lamblia Glycerol-3-phosphate dehydrogenase 0.0113 0.0678 0.5
Loa Loa (eye worm) PHD-finger family protein 0.0041 0.0139 0.01
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0092 0.0523 0.238
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0092 0.0523 0.0485
Echinococcus granulosus snurportin 1 0.0298 0.2071 1
Schistosoma mansoni family S12 unassigned peptidase (S12 family) 0.0043 0.0157 0.0117
Schistosoma mansoni acetyl-CoA C-acetyltransferase 0.0045 0.0168 0.0128
Loa Loa (eye worm) hypothetical protein 0.0077 0.0405 0.0367
Loa Loa (eye worm) beta-lactamase 0.0043 0.0157 0.0117
Trypanosoma cruzi L-2-hydroxyglutarate dehydrogenase, mitochondrial, putative 0.0113 0.0678 1
Trypanosoma brucei electron transfer flavoprotein-ubiquinone oxidoreductase, putative 0.0113 0.0678 1
Loa Loa (eye worm) hypothetical protein 0.0043 0.0157 0.0117
Brugia malayi cDNA sequence BC016226 0.0113 0.0678 0.6977
Trichomonas vaginalis D-aminoacylase, putative 0.0043 0.0157 1
Loa Loa (eye worm) bromodomain containing protein 0.0035 0.0095 0.0055
Trypanosoma cruzi glycerol-3-phosphate dehydrogenase (FAD-dependent), putative 0.0113 0.0678 1
Mycobacterium tuberculosis Possible penicillin-binding protein 0.0278 0.1917 0.1957
Leishmania major hypothetical protein, conserved 0.0113 0.0678 1
Trypanosoma cruzi hypothetical protein, conserved 0.0043 0.0157 0.231
Loa Loa (eye worm) nucleolar RNA-associated protein alpha 0.0298 0.2071 0.2039
Loa Loa (eye worm) MH2 domain-containing protein 0.0144 0.0913 0.0877
Trypanosoma cruzi Present in the outer mitochondrial membrane proteome 20 0.0113 0.0678 1
Toxoplasma gondii hypothetical protein 0.0113 0.0678 1
Schistosoma mansoni bromodomain containing protein 0.0126 0.0778 0.0741
Echinococcus multilocularis beta LACTamase domain containing family member 0.0043 0.0157 0.0575
Mycobacterium leprae Probable cholesterol oxidase precursor ChoD (cholesterol-O2 oxidoreductase) 0.0113 0.0678 0.0529
Brugia malayi Hypothetical 52.5 kDa protein ZK945.1 in chromosome II, putative 0.0043 0.0157 0.1278
Trypanosoma cruzi ISWI complex protein 0.0031 0.0059 0.0872
Leishmania major hypothetical protein, conserved 0.0031 0.0059 0.0872
Mycobacterium tuberculosis Possible thiamine biosynthesis oxidoreductase ThiO 0.0113 0.0678 0.0579
Mycobacterium tuberculosis Probable D-amino acid oxidase Aao 0.124 0.9152 1
Schistosoma mansoni glycerol-3-phosphate dehydrogenase 0.0113 0.0678 0.064
Brugia malayi Bromodomain containing protein 0.015 0.0954 1
Echinococcus multilocularis zinc finger protein 0.0039 0.0123 0.0411
Onchocerca volvulus Dimethylglycine dehydrogenase, mitochondrial homolog 0.0113 0.0678 1
Mycobacterium leprae PROBABLE D-AMINO ACID OXIDASE AAO 0.1353 1 1
Echinococcus multilocularis methyl CpG binding domain protein 2 0.0034 0.0085 0.0225
Echinococcus granulosus histone lysine methyltransferase setb 0.0034 0.0085 0.0225
Trypanosoma cruzi glycerol-3-phosphate dehydrogenase, putative 0.0113 0.0678 1
Loa Loa (eye worm) glycerol-3-phosphate dehydrogenase 0.0113 0.0678 0.064
Schistosoma mansoni NAD dehydrogenase 0.0113 0.0678 0.064
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0092 0.0523 0.0485
Entamoeba histolytica NAD(FAD)-dependent dehydrogenase, putative 0.0113 0.0678 1
Trypanosoma cruzi hypothetical protein, conserved 0.0043 0.0157 0.231
Echinococcus multilocularis histone lysine methyltransferase setb histone lysine methyltransferase eggless 0.0034 0.0085 0.0225
Trichomonas vaginalis D-aminoacylase, putative 0.0043 0.0157 1
Echinococcus multilocularis fetal alzheimer antigen, falz 0.0045 0.0168 0.063
Schistosoma mansoni fad oxidoreductase 0.0113 0.0678 0.064
Schistosoma mansoni zinc finger protein 0.0039 0.0123 0.0084
Trypanosoma cruzi L-2-hydroxyglutarate dehydrogenase, mitochondrial, putative 0.0113 0.0678 1
Brugia malayi GTP-binding regulatory protein Gs alpha-S chain, putative 0.0092 0.0523 0.5288
Plasmodium falciparum FAD-dependent glycerol-3-phosphate dehydrogenase, putative 0.0113 0.0678 1
Loa Loa (eye worm) hypothetical protein 0.0043 0.0157 0.0117
Schistosoma mansoni hypothetical protein 0.0298 0.2071 0.2039
Loa Loa (eye worm) hypothetical protein 0.0113 0.0678 0.064
Loa Loa (eye worm) hypothetical protein 0.0043 0.0157 0.0117
Brugia malayi RE18450p 0.0113 0.0678 0.6977
Brugia malayi beta-lactamase family protein 0.0043 0.0157 0.1278

Activities

Activity type Activity value Assay description Source Reference
Activity (binding) = 22 % Displacement of [3H]DPCPX from human Adenosine A1 receptor expressed in CHO cells at 1 uM after 60 mins ChEMBL. 26824742
Activity (binding) = 24 % Displacement of [3H]NECA from human Adenosine A3 receptor expressed in HeLa cells at 1 uM after 30 mins ChEMBL. 26824742
Activity (binding) = 39 % Displacement of [3H]ZM241385 from human Adenosine A2A receptor expressed in HeLa cells at 1 uM after 30 mins ChEMBL. 26824742
Inhibition (ADMET) Inhibition of human recombinant CYP3A4 expressed in baculosomes at 100 fold Ki ChEMBL. 24900602
Inhibition (ADMET) Inhibition of human recombinant CYP1A2 expressed in baculosomes at 100 fold Ki ChEMBL. 24900602
Inhibition (binding) = 11 % Displacement of [3H]NECA from adenosine A3 receptor in human HeLa cells at 10 uM after 180 mins ChEMBL. 24900602
Inhibition (binding) = 16 % Displacement of [3H]DPCPX from human adenosine A1 receptor expressed in CHO cells at 10 uM after 60 mins ChEMBL. 24900602
Inhibition (binding) = 34 % Displacement of [3H]ZM241385 from adenosine A2A receptor in human HeLa cells at 10 uM after 30 mins ChEMBL. 24900602
Kb (functional) = 25.2 nM Antagonist activity at human adenosine A2B receptor expressed in HEK293 cells assessed as inhibition of NECA-stimulated cAMP accumulation incubated for 15 mins prior to NECA-challenge measured after 15 mins by spectrophotometry ChEMBL. 24900602
Ki (binding) = 23.6 nM Displacement of [3H]DPCPX from human adenosine A2B receptor expressed in HEK293 cells after 30 mins by Scatchard plot analysis ChEMBL. 24900602
Ki (binding) = 23.6 nM Displacement of [3H]DPCPX from human Adenosine A2B receptor expressed in HEK293 cells after 30 mins ChEMBL. 26824742
Ki (binding) > 10000 nM Displacement of [3H]DPCPX from human adenosine A1 receptor expressed in CHO cells after 60 mins ChEMBL. 24900602
Ki (binding) > 10000 nM Displacement of [3H]NECA from adenosine A3 receptor in human HeLa cells after 180 mins ChEMBL. 24900602
Ki (binding) > 10000 nM Displacement of [3H]ZM241385 from adenosine A2A receptor in human HeLa cells after 30 mins ChEMBL. 24900602
Potency (functional) 1.2589 uM PUBCHEM_BIOASSAY: qHTS for Inhibitors of TGF-b. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID588856, AID588860] ChEMBL. No reference
Potency (functional) 7.0795 uM PubChem BioAssay. qHTS for Agonist of gsp, the Etiologic Mutation Responsible for Fibrous Dysplasia/McCune-Albright Syndrome: qHTS. (Class of assay: confirmatory) ChEMBL. No reference
Potency (functional) 16.5113 uM PUBCHEM_BIOASSAY: Primary qHTS for delayed death inhibitors of the malarial parasite plastid, 96 hour incubation. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID488745, AID488752, AID488774, AID504848, AID504850] ChEMBL. No reference
Potency (functional) = 19.9526 um PUBCHEM_BIOASSAY: qHTS Inhibitors of AmpC Beta-Lactamase (assay with detergent). (Class of assay: confirmatory) [Related pubchem assays: 1002 (Confirmation Concentration-Response Assay for Inhibitors of AmpC Beta-Lactamase (assay with detergent)), 585 (Promiscuous and Specific Inhibitors of AmpC Beta-Lactamase (assay without detergent) - a screen old NIH MLSMR collection), 584 (Promiscuous and Specific Inhibitors of AmpC Beta-Lactamase (assay with detergent) - a screen of the old NIH MLSMR collection), 1003 (Confirmation Cuvette-Based Assay for Inhibitors of AmpC Beta-Lactamase (assay with detergent))] ChEMBL. No reference
Potency (functional) 100 uM PUBCHEM_BIOASSAY: qHTS Assay for Inhibitors of BAZ2B. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID504391] ChEMBL. No reference

Phenotypes

Whole-cell/tissue/organism interactions

Species name Source Reference Is orphan
Plasmodium falciparum ChEMBL23

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

2 literature references were collected for this gene.

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