Detailed view for TcCLB.506661.170

Basic information

TDR Targets ID: 31423
Trypanosoma cruzi, Enriched in surface-labeled proteome protein 12
Source Database / ID:  TriTrypDB  GeneDB

pI: 8.0512 | Length (AA): 213 | MW (Da): 24255 | Paralog Number: 4

Signal peptide: Y | GPI Anchor: N | Predicted trans-membrane segments: 2

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There is 1 model calculated for this protein. More info on this model, including the model itself is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
90 183 2cw5 (A) 16 101 32.00 0.8 0.53 0.530515 0.96

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile epimastigote, metacyclic. Smircich P
Show/Hide expression data references
  • Smircich P Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi.

Orthologs

Ortholog group members (OG5_136729)

Species Accession Gene Product
Trypanosoma brucei gambiense Tbg972.7.4820   hypothetical protein, conserved
Trypanosoma brucei gambiense Tbg972.7.4840   hypothetical protein, conserved
Trypanosoma brucei gambiense Tbg972.7.4845   hypothetical protein, conserved
Trypanosoma brucei gambiense Tbg972.7.4810   hypothetical protein, conserved
Trypanosoma brucei Tb927.7.4270   hypothetical protein, conserved
Trypanosoma brucei Tb927.7.4280   hypothetical protein, conserved
Trypanosoma brucei Tb927.7.4230   Enriched in surface-labeled proteome protein 12
Trypanosoma congolense TcIL3000_7_3470   hypothetical protein, conserved
Trypanosoma congolense TcIL3000_7_3410   hypothetical protein, conserved
Trypanosoma congolense TcIL3000_7_3460   hypothetical protein, conserved
Trypanosoma cruzi TcCLB.506661.160   Enriched in surface-labeled proteome protein 12
Trypanosoma cruzi TcCLB.511245.10   Enriched in surface-labeled proteome protein 12
Trypanosoma cruzi TcCLB.508863.20   Enriched in surface-labeled proteome protein 12
Trypanosoma cruzi TcCLB.508863.10   Enriched in surface-labeled proteome protein 12
Trypanosoma cruzi TcCLB.506661.170   Enriched in surface-labeled proteome protein 12

Essentiality

TcCLB.506661.170 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.7.4270 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb927.7.4270 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (6 days) alsford
Tb927.7.4270 Trypanosoma brucei significant gain of fitness in procyclic forms alsford
Tb927.7.4270 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
Tb927.7.4230 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb927.7.4230 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (6 days) alsford
Tb927.7.4230 Trypanosoma brucei significant gain of fitness in procyclic forms alsford
Tb927.7.4230 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
Tb927.7.4280 Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb927.7.4280 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb927.7.4280 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb927.7.4280 Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.1

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Influenza B virus (strain B/Lee/1940) Neuraminidase Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0124 0.3394 0.5
0.0461 0.5824 1
0.2819 0.4742 1
0.1422 1 1
0.0945 0.5 0.5
0.0232 1 1
0.1222 0.3926 0.5875
0.2872 0.8597 1
0.0884 1 1
0.0508 0.3764 0.6719
0.0642 1 1
0.2738 1 1
0.0884 1 1
0.0563 0.5829 0.9777
0.0559 0.5826 1
0.0107 0.4598 1
0.0521 0.4652 0.4621
0.0359 0.7959 1
0.0222 1 1
0.1434 0.9898 1
0.1316 0.5 0.5
0.2835 1 1
0.0811 0.9173 0
0.2509 0.5736 0.5954
0.0704 0.7935 1
0.0108 1 0.5
0.1434 0.9898 1
0.0234 0.5 0.5
0.0217 0.8023 0.5
0.0704 0.7935 1
0.0481 0.5 0.5
0.0923 0.3093 0.5
0.0679 0.4251 1
0.1295 0.4747 1
0.0245 1 1
0.0545 0.3988 0.6707
0.1434 0.9898 1
0.0056 1 0.5
0.0812 0.7088 0
0.0679 0.3591 0.9683
0.0124 0.3163 0.8049
0.0682 0.4254 0.7713
0.1175 0.5 0.5
0.1302 0.394 0.6123
0.1244 1 1
0.0453 0.6401 1
0.2819 0.4742 1
0.022 1 1
0.0508 0.3764 0.6719
0.2738 1 1
0.0442 0.5 0.5
0.2509 0.5736 0.5954
0.024 0.5723 1
0.0112 0.3233 0.5
0.0124 0.5 0.5
0.1257 0.3295 0.5785
0.0465 0.5542 1
0.1756 1 1
0.0805 0.796 0
0.0056 1 0.5
0.0123 1 1
0.0507 0.9893 1
0.0688 1 1
0.0704 0.7935 1
0.052 0.5474 1
0.2819 0.4742 1
0.0685 0.8514 1
0.2515 1 1
0.0503 0.9763 0.5
0.2166 0.6411 1
0.0559 0.5826 1
0.1295 0.4747 1
0.1691 0.507 1
0.1378 0.5453 1
0.0124 0.4788 1
0.1173 1 1
0.3066 1 1
0.252 0.5 0.5
0.026 0.2714 0.4779
0.0673 0.7942 1
0.2639 0.5 0.5
0.2509 0.5736 0.5954
0.0634 1 1
0.3567 0.3999 1
0.2819 0.4742 1
0.252 0.4429 1
0.1008 0.2719 0
0.0519 0.9764 1
0.0487 0.2846 1
0.0099 0.5 0.5
0.0192 0.5316 1
0.1434 0.9898 1
0.0546 0.7975 1
0.0427 0.3639 1
0.0704 0.7935 1
0.0217 0.2863 0
0.0518 0.9927 1
0.0209 1 0.5
0.2535 1 0.5
0.0907 0.3213 1
0.2509 0.5736 0.5954
0.0508 0.3764 0.6719
0.0704 0.7935 1
0.0487 1 0.5
0.1176 1 0.5
0.1295 0.4747 1
0.2835 1 1
0.0102 0.9056 0.9168
0.0907 0.3213 1
0.0124 0.4788 1
0.0643 0.6944 1
0.012 1 1
0.0113 0.3083 0.5
0.0125 0.2677 1
0.2835 1 1
0.1136 0.5 0.5
0.1378 0.5453 1
0.252 0.4429 1
0.0124 0.3997 0.3459
0.0124 0.3341 0.5
0.0674 0.787 1
0.0221 1 1
0.0124 0.3113 1
0.0534 0.8073 1
0.0685 0.8514 1
0.069 0.6017 0
0.0124 0.3163 0.8049
0.0789 0.9195 1
0.0505 0.9981 1
0.0124 0.2644 1
0.0124 0.5 0.5
0.0511 0.3629 1
0.0532 0.3564 0.7268
0.0124 1 1
0.1186 0.5 0.5
0.0834 1 0.5
0.181 0.6525 1
0.3066 1 1
0.2212 1 0.5
0.0704 0.7935 1
0.0559 0.5826 1
0.0798 0.6946 1
0.0101 0.8044 1
0.1071 0.6295 1
0.0559 0.2929 0
0.1383 0.5124 1
0.0124 0.3727 1
0.2819 0.4742 1
0.012 0.2982 0.5847
0.0685 0.8514 1
0.0108 0.3771 1
0.1071 0.6295 1
0.2955 1 1
0.0512 0.3487 0
0.0221 1 1
0.1173 1 1
0.0684 0.5 0.5
0.0695 0.806 0.8036
0.034 0.3323 1
0.2509 0.5736 0.5954
0.2515 0.822 1
0.0903 0.2582 1
0.2001 0.8665 0.9449
0.1859 1 1
0.1378 0.5453 1
0.1295 0.4747 1
0.0103 1 1
0.0416 0.8162 1
0.0521 0.4652 0.4621
0.0704 0.7935 1
0.0218 0.3242 1
0.0442 0.5 0.5
0.1311 1 1
0.252 0.4429 1
0.0334 0.5003 1
0.1071 1 1
0.0445 1 1
0.0113 0.2588 0.5
0.0213 0.5 0.5
0.0805 0.796 0
0.031 0.5175 0.5
0.252 0.4429 1
0.1101 1 0.5
0.1031 0.5 0.5
0.0108 0.3771 1
0.0682 0.4254 0.7713
0.0124 0.5 0.5
0.1092 1 1
0.0679 0.7935 1
0.2723 0.5 0.5
0.0214 1 0.5
0.2819 0.4742 1
0.1428 1 1
0.2716 0.4711 0.9568
0.2661 1 0.5
0.034 0.4628 1
0.133 0.3572 0.6417
0.0487 0.2846 1
0.0124 0.5967 1
0.0798 0.9113 1
0.0903 0.2582 1
0.1534 1 1
0.3125 1 0.5
0.055 0.5933 1
0.0508 0.3764 0.6719
0.0682 0.4254 0.7713
0.2515 1 1
0.0218 0.3242 1
0.0513 0.6503 1
0.0341 0.5387 0
0.0343 0.3355 0.5
0.0107 1 0.5
0.4383 0.2761 1
0.2509 0.5736 0.5954
0.2819 0.4742 1
0.1788 1 1
0.012 0.2655 1
0.2819 0.4742 1
0.0124 1 1
0.0124 0.3163 0.8049
0.1154 0.5 0.5
0.2884 1 0.5
0.1308 0.5 0.5
0.0119 1 1
0.1348 0.7828 1
0.2819 0.4742 1
0.0108 0.3771 1
0.2733 1 0.5
0.1101 1 0.5
0.2631 1 1
0.1378 0.5453 1
0.09 0.9176 1
0.1257 0.3295 0.5785
0.0216 0.5 0.5
0.2738 1 1
0.1453 0.9185 1
0.2509 0.5736 0.5954
0.252 0.4429 1
0.1517 1 0.5
0.1176 1 0.5
0.0416 0.5623 1
0.2738 1 1
0.2819 0.4742 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

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Gene identifier TcCLB.506661.170 (Trypanosoma cruzi), Enriched in surface-labeled proteome protein 12
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