pI: 5.001 |
Length (AA): 1520 |
MW (Da): 171466 |
Paralog Number:
9
Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
PDB Structures:
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Mid 40-60% percentile | Procyclic, Bloodstream Form. | Siegel TN |
Siegel TN | Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites. |
Ortholog group members (OG5_130635)
Species | Accession | Gene Product |
---|---|---|
Leishmania braziliensis | LbrM.27.0610 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania braziliensis | LbrM.27.0620 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania braziliensis | LbrM.27.2140 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania braziliensis | LbrM.27.0600 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania donovani | LdBPK_270510.1 | calpain-like cysteine peptidase, putative |
Leishmania infantum | LinJ.27.0500 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania infantum | LinJ.27.2520 | cysteine peptidase, Clan CA, family C2, putative |
Leishmania infantum | LinJ.27.2490 | calpain-like cysteine peptidase |
Leishmania infantum | LinJ.27.0510 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania major | LmjF.27.0490 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania major | LmjF.27.0500 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania major | LmjF.27.0510 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania mexicana | LmxM.27.0500 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania mexicana | LmxM.27.0490 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Leishmania mexicana | LmxM.27.0510 | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative |
Trypanosoma brucei gambiense | Tbg972.11.1180 | calpain-like protein, putative |
Trypanosoma brucei gambiense | Tbg972.11.1190 | calpain-like cysteine peptidase, putative,antigen, putative,cysteine peptidase, Clan CA, family C2, putative |
Trypanosoma brucei gambiense | Tbg972.11.1170 | |
Trypanosoma brucei | Tb11.v5.0432 | calpain-like cysteine peptidase, putative |
Trypanosoma brucei | Tb927.11.1130 | calpain-like cysteine peptidase, putative |
Trypanosoma brucei | Tb427tmp.11.0001 | hypothetical protein |
Trypanosoma brucei | Tb11.v5.1010 | variant surface glycoprotein (VSG), putative |
Trypanosoma brucei | Tb927.11.1090 | calpain-like protein, putative |
Trypanosoma brucei | Tb11.v5.1011 | calpain-like cysteine peptidase, putative |
Trypanosoma brucei | Tb11.v5.1038 | calpain-like cysteine peptidase, putative |
Trypanosoma brucei | Tb927.11.1100 | cysteine peptidase, Clan CA, family C2, putative |
Trypanosoma brucei | Tb927.11.1110 | calpain, putative |
Trypanosoma brucei | Tb11.v5.0702 | calpain-like cysteine peptidase, putative |
Trypanosoma congolense | TcIL3000.11.1030 | cysteine peptidase, Clan CA, family C2, putative |
Trypanosoma congolense | TcIL3000_0_11260 | calpain, putative |
Trypanosoma cruzi | TcCLB.511445.10 | calpain-like cysteine peptidase, putative |
Trypanosoma cruzi | TcCLB.511441.10 | calpain cysteine peptidase, putative |
Trypanosoma cruzi | TcCLB.509013.10 | calpain-like cysteine peptidase, putative |
Trypanosoma cruzi | TcCLB.445281.9 | calpain-like cysteine peptidase, putative |
Trypanosoma cruzi | TcCLB.506721.30 | cysteine peptidase, Clan CA, family C2, putative |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
Tb11.v4.0001 | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (3 days) | alsford |
Tb11.v4.0001 | Trypanosoma brucei | significant gain of fitness in bloodstream forms (6 days) | alsford |
Tb11.v4.0001 | Trypanosoma brucei | no significant loss or gain of fitness in procyclic forms | alsford |
Tb11.v4.0001 | Trypanosoma brucei | no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms | alsford |
Tb11.47.0036 | Trypanosoma brucei | significant loss of fitness in bloodstream forms (3 days) | alsford |
Tb11.47.0036 | Trypanosoma brucei | significant loss of fitness in bloodstream forms (6 days) | alsford |
Tb11.47.0036 | Trypanosoma brucei | significant loss of fitness in procyclic forms | alsford |
Tb11.47.0036 | Trypanosoma brucei | significant loss of fitness in differentiation of procyclic to bloodstream forms | alsford |
Tb11.47.0035 | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (3 days) | alsford |
Tb11.47.0035 | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (6 days) | alsford |
Tb11.47.0035 | Trypanosoma brucei | no significant loss or gain of fitness in procyclic forms | alsford |
Tb11.47.0035 | Trypanosoma brucei | significant gain of fitness in differentiation of procyclic to bloodstream forms | alsford |
Tb11.57.0008 | Trypanosoma brucei | significant loss of fitness in bloodstream forms (3 days) | alsford |
Tb11.57.0008 | Trypanosoma brucei | significant loss of fitness in bloodstream forms (6 days) | alsford |
Tb11.57.0008 | Trypanosoma brucei | no significant loss or gain of fitness in procyclic forms | alsford |
Tb11.57.0008 | Trypanosoma brucei | significant loss of fitness in differentiation of procyclic to bloodstream forms | alsford |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Leishmania major | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative | Compounds | References |
Leishmania major | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative | Compounds | References |
Leishmania major | calpain-like cysteine peptidase, putative,cysteine peptidase, Clan CA, family C2, putative | Compounds | References |
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) | Protein Rev | Compounds | References |
Human immunodeficiency virus 1 | Human immunodeficiency virus type 1 REV | Compounds | References |