pI: 7.4262 |
Length (AA): 603 |
MW (Da): 67626 |
Paralog Number:
1
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 5 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
240 | 583 | 4hwy (A) | 44 | 334 | 26.00 | 0 | 1 | 0.631481 | 0.46 |
312 | 583 | 3pdf (A) | 208 | 435 | 46.00 | 0 | 1 | 0.764278 | -0.22 |
523 | 580 | 3u8e (A) | 161 | 216 | 38.00 | 0.000039 | 0.22 | 0.330386 | -0.31 |
523 | 577 | 4bpv (K) | 279 | 334 | 31.00 | 0.015 | 0.8 | 0.417511 | 0.08 |
187 | 318 | 4ja0 (A) | 275 | 416 | 30.00 | 0.017 | 0.32 | 0.529068 | 0 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Upper 60-80% percentile | ME49 Oocyst. | Fritz HM |
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Lower 20-40% percentile | ME49 Tachyzoite, ME49 Bradyzoite. | Gregory Sibley/Greg |
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Lower 0-20% percentile | VEG Tachyzoite, ME49 merozoite. | Gregory Hehl AB |
Hehl AB | Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within feline enterocytes. |
Gregory | ToxoDB |
Sibley/Greg | ToxoDB |
Fritz HM | Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts. |
Ortholog group members (OG5_130494)
Species | Accession | Gene Product |
---|---|---|
Babesia bovis | BBOV_I000540 | preprocathepsin c precursor, putative |
Babesia bovis | BBOV_II000170 | cathepsin C precursor, putative |
Caenorhabditis elegans | CELE_F36D3.9 | Protein CPR-2 |
Cryptosporidium hominis | Chro.40239 | preprocathepsin c precursor |
Cryptosporidium parvum | cgd4_2110 | preprocathepsin c precursor, putative |
Dictyostelium discoideum | DDB_G0292462 | hypothetical protein |
Giardia lamblia | GL50803_14566 | Dipeptidyl-peptidase I precursor |
Homo sapiens | ENSG00000109861 | cathepsin C |
Mus musculus | ENSMUSG00000030560 | cathepsin C |
Neospora caninum | NCLIV_041870 | hypothetical protein |
Plasmodium berghei | PBANKA_1460700 | dipeptidyl aminopeptidase 2 |
Plasmodium berghei | PBANKA_0931300 | dipeptidyl aminopeptidase 1, putative |
Plasmodium falciparum | PF3D7_1116700 | dipeptidyl aminopeptidase 1 |
Plasmodium falciparum | PF3D7_1247800 | dipeptidyl aminopeptidase 2 |
Plasmodium knowlesi | PKNH_1467500 | dipeptidyl aminopeptidase 2, putative |
Plasmodium knowlesi | PKNH_0914400 | dipeptidyl aminopeptidase 1, putative |
Plasmodium vivax | PVX_091465 | dipeptidyl aminopeptidase 1, putative |
Plasmodium vivax | PVX_101280 | dipeptidyl aminopeptidase 2, putative |
Plasmodium yoelii | PY02150 | Homo sapiens P3ECSL-related |
Plasmodium yoelii | PY05365 | cathepsin c precursor |
Schistosoma japonicum | Sjp_0207730 | Cathepsin C precursor, putative |
Schistosoma japonicum | Sjp_0207740 | ko:K01275 cathepsin C [EC3.4.14.1], putative |
Schistosoma mansoni | Smp_019030 | dipeptidyl-peptidase I (C01 family) |
Schmidtea mediterranea | mk4.002926.00 | Dipeptidyl peptidase 1 |
Schmidtea mediterranea | mk4.002926.03 | Dipeptidyl peptidase 1 |
Toxoplasma gondii | TGME49_289620 | cathepsin CPC1 |
Toxoplasma gondii | TGME49_267490 | preprocathepsin c precursor, putative |
Theileria parva | TP02_0883 | cathepsin C, putative |
Theileria parva | TP03_0357 | cathepsin C, putative |
Trichomonas vaginalis | TVAG_159150 | Clan CA, family C1, cathepsin B-like cysteine peptidase |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
PBANKA_0931300 | Plasmodium berghei | Essential | plasmo |
PBANKA_1460700 | Plasmodium berghei | Dispensable | plasmo |
TGME49_289620 | Toxoplasma gondii | Probably non-essential | sidik |
TGME49_267490 this record | Toxoplasma gondii | Probably non-essential | sidik |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Infectious bronchitis virus | 3C-like protease | Compounds | References |
Mus musculus | cathepsin C | Compounds | References |
Homo sapiens | cathepsin C | Compounds | References |
Species | Target | Length | Identity | Alignment span | Linked Drugs | Reference |
---|---|---|---|---|---|---|
Bos taurus | Cathepsin B | 335 aa | 24.3% | 272 aa | Compounds | References |
Capra hircus | Cathepsin B | 335 aa | 24.5% | 274 aa | Compounds | References |