pI: 7.8974 |
Length (AA): 416 |
MW (Da): 48016 |
Paralog Number:
2
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 3 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
50 | 413 | 2dw4 (A) | 175 | 519 | 33.00 | 0 | 1 | 1.0968 | 0.99 |
61 | 140 | 2fq3 (A) | 317 | 395 | 22.00 | 0 | 0.83 | 0.517508 | -1.46 |
155 | 193 | 5ttj (A) | 56 | 94 | 54.00 | 0.02 | 0.58 | 0.57705 | 1.04 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Ortholog group members (OG5_130448)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT4G16310 | protein LSD1-like 3 |
Brugia malayi | Bm1_20500 | SWIRM domain containing protein |
Caenorhabditis elegans | CELE_T08D10.2 | Protein LSD-1 |
Caenorhabditis elegans | CELE_Y40B1B.6 | Protein SPR-5 |
Drosophila melanogaster | Dmel_CG17149 | Suppressor of variegation 3-3 |
Echinococcus granulosus | EgrG_000095900 | lysine specific histone demethylase 1A |
Echinococcus multilocularis | EmuJ_000095900 | lysine specific histone demethylase 1A |
Homo sapiens | ENSG00000004487 | lysine (K)-specific demethylase 1A |
Loa Loa (eye worm) | LOAG_09223 | hypothetical protein |
Loa Loa (eye worm) | LOAG_13424 | hypothetical protein |
Loa Loa (eye worm) | LOAG_07849 | hypothetical protein |
Mus musculus | ENSMUSG00000036940 | lysine (K)-specific demethylase 1A |
Oryza sativa | 4349214 | Os10g0532100 |
Onchocerca volvulus | OVOC180 |
|
Schistosoma japonicum | Sjp_0102670 | ko:K00540 amine oxidase (flavin containing) domain 2 [EC:1.-.-.-], putative |
Schistosoma japonicum | Sjp_0082330 | Lysine-specific histone demethylase 1, putative |
Schistosoma mansoni | Smp_150560 | Lysine-specific histone demethylase 1 |
Schmidtea mediterranea | mk4.004117.00 | Lysine-specific histone demethylase 1A |
Schmidtea mediterranea | mk4.004117.01 |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Homo sapiens | lysine (K)-specific demethylase 1A | Compounds | References |