pI: 8.5142 |
Length (AA): 184 |
MW (Da): 20618 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 2 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
23 | 184 | 4v24 (A) | 97 | 263 | 34.00 | 0.00000000036 | 1 | 1.33983 | -0.7 |
29 | 64 | 6fwu (A) | 176 | 211 | 39.00 | 0.87 | 0.65 | 0.596652 | 0.45 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Ortholog group members (OG5_128162)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT4G21540 | sphingosine kinase 1 |
Arabidopsis thaliana | AT4G21534 | Diacylglycerol kinase family protein |
Candida albicans | CaO19.12722 | similar to S. cerevisiae LCB4 (YOR171C) sphingoid long chain base (LCB) kinase |
Candida albicans | CaO19.5257 | similar to S. cerevisiae LCB4 (YOR171C) sphingoid long chain base (LCB) kinase |
Caenorhabditis elegans | CELE_C34C6.5 | Protein SPHK-1, isoform D |
Dictyostelium discoideum | DDB_G0284545 | sphingosine kinase |
Dictyostelium discoideum | DDB_G0272522 | sphingosine kinase |
Drosophila melanogaster | Dmel_CG1747 | Sphingosine kinase 1 |
Drosophila melanogaster | Dmel_CG32484 | Sphingosine kinase 2 |
Echinococcus granulosus | EgrG_000515000 | sphingosine kinase 1 |
Entamoeba histolytica | EHI_023410 | hypothetical protein, conserved |
Echinococcus multilocularis | EmuJ_000515000 | sphingosine kinase 1 |
Homo sapiens | ENSG00000063176 | sphingosine kinase 2 |
Homo sapiens | ENSG00000176170 | sphingosine kinase 1 |
Loa Loa (eye worm) | LOAG_14557 | hypothetical protein |
Mus musculus | ENSMUSG00000057342 | sphingosine kinase 2 |
Mus musculus | ENSMUSG00000061878 | sphingosine kinase 1 |
Mycobacterium tuberculosis | Rv3218 | Conserved protein |
Mycobacterium ulcerans | MUL_2540 | hypothetical protein |
Oryza sativa | 4343607 | Os07g0563000 |
Oryza sativa | 4327845 | Os01g0782200 |
Saccharomyces cerevisiae | YLR260W | sphinganine kinase LCB5 |
Saccharomyces cerevisiae | YOR171C | sphinganine kinase LCB4 |
Schistosoma japonicum | Sjp_0217560 | ko:K00901 diacylglycerol kinase [EC2.7.1.107], putative |
Schistosoma mansoni | Smp_157100 | sphingoid long chain base kinase |
Schistosoma mansoni | Smp_117370 | sphingosine kinase A B |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
Mycobacterium tuberculosis | non-essential | nmpdr |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Homo sapiens | sphingosine kinase 2 | Compounds | References |
Homo sapiens | sphingosine kinase 1 | Compounds | References |
Mus musculus | sphingosine kinase 1 | Compounds | References |
Mus musculus | sphingosine kinase 2 | Compounds | References |