Detailed view for Rv3855

Basic information

TDR Targets ID: 980371
Mycobacterium tuberculosis, Transcriptional regulatory repressor protein (TetR-family) EthR
Source Database / ID:  Tuberculist 

pI: 4.9309 | Length (AA): 216 | MW (Da): 23725 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
21 216 5nim (A) 21 216 99.99 0 1 2.21951 -2.2
29 79 1z0x (A) 10 61 37.00 0.0029 1 0.776211 -0.88

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_191427)

Species Accession Gene Product
Mycobacterium leprae ML0064c   Probable transcriptional regulatory repressor protein (TetR-family) EthR
Mycobacterium tuberculosis Rv3855   Transcriptional regulatory repressor protein (TetR-family) EthR
Mycobacterium ulcerans MUL_5027   TetR family transcriptional regulator
Mycobacterium ulcerans MUL_3708   AcrR family transcriptional regulator
Mycobacterium ulcerans MUL_0934   transcriptional regulator

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

Compound Source Reference
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Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Mycobacterium leprae Probable transcriptional regulatory repressor protein (TetR-family) EthR Compounds References
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) HTH-type transcriptional regulator EthR Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.1509 0.3184 1
0.8456 1 1
0.1336 1 1
1.2417 1 1
1.0134 1 1
0.1406 0.275 0.8547
0.2715 0.5487 0.8079
0.1496 0.9352 0.5
0.2067 0.2848 1
0.1336 0.3153 1
0.1346 0.3236 0.3518
1.2028 1 1
0.8458 1 1
0.1354 0.5524 1
0.9346 1 0.5
0.1347 1 1
0.2684 1 0.5
0.2004 0.3131 1
0.542 1 0.5
0.3124 0.2715 1
1.2038 1 1
0.2871 0.2756 1
0.8498 1 1
0.2807 0.3332 1
0.2067 0.2848 1
0.1377 0.2755 1
0.2714 0.7966 1
0.0833 0.994 1
0.1496 0.6251 1
0.162 0.327 1
0.2067 0.2848 1
0.3122 0.2681 1
0.0833 0.9941 1
0.2067 0.2848 1
0.279 0.4916 1
0.2823 0.4042 1
0.2826 0.5616 1
1.0583 1 1
0.8866 1 1
0.1342 0.2574 1
0.1451 0.2905 1
0.2067 0.2848 1
0.1346 0.3242 1
0.279 0.4916 1
0.2807 0.363 1
0.8173 1 1
0.1382 0.2575 1
0.1562 0.3847 1
0.3155 1 1
0.2183 0.3379 1
0.1667 1 1
0.2708 1 1
0.7436 1 0.5
0.1371 0.4077 1
0.0802 0.497 1
0.1354 0.4179 1
1.0583 1 1
0.279 0.4984 1
0.2807 0.3332 1
0.1364 0.7882 1
0.2067 0.2848 1
0.9771 1 1
0.2066 0.3545 1
0.2067 0.2848 1
0.1337 1 1
0.2019 0.3116 1
0.2132 0.998 1
0.2292 0.4596 1
0.1337 0.8346 1
0.2067 0.2848 1
1.0235 1 1
0.2258 0.4476 1
0.1549 0.9361 1
0.1337 1 1
0.8173 1 1
0.7054 1 1
0.134 0.3024 1
0.162 0.327 1
1.0583 1 1
0.1425 0.4317 1
0.2872 0.5044 1
1.0633 1 1
0.2306 0.3451 1
0.2904 0.4613 1
0.2292 0.4596 1
0.9771 1 1
0.1223 1 1
0.1577 0.4793 1
0.1667 1 1
1.0004 1 1
0.151652 1 0.5
0.2739 0.2858 1
0.1522 0.9358 1
0.5601 1 1
0.9877 1 1
1.2028 1 1
0.2067 0.2848 1
0.2884 0.3724 1
0.1667 0.6468 0.5
0.1577 0.6302 1
0.1391 0.4267 1
0.537 1 0.5
1.1713 1 1
0.286 0.2617 1
1.0583 1 1
1.2082 1 1
0.1373 1 1
0.5406 1 1
0.2346 0.346 1
0.2117 0.2659 1
0.9791 1 0.5
0.8513 1 1
0.1522 0.927 1
0.2684 1 0.5
1.0472 1 1
0.1346 0.3236 0.3518
0.1667 1 1
0.1667 1 1
0.1549 0.9272 1
0.2815 0.2738 1
0.2022 0.5634 1
0.8738 1 1
0.1389 0.2814 1
1.2028 1 1
0.2739 0.286 1
1.0583 1 1
0.0807 0.7536 1
0.2705 0.7367 1
0.281 1 1
0.2694 1 1
0.2067 0.2848 1
0.1337 1 1
0.1667 1 1
0.1667 0.6468 0.5
0.1425 0.2846 1
0.2066 0.3599 1
0.3099 0.2661 1
0.2406 0.6421 1
1.074 1 1
0.9877 1 0.5
0.2174 0.4168 1
0.142543 1 1
0.1346 0.3242 1
0.2292 0.4596 1
0.136 0.3058 1
0.9791 1 1
0.1391 0.2822 1
1.0134 1 1
0.2807 0.3332 1
0.2169 0.3256 1
0.9618 1 1
0.1596 1 1
0.1346 0.3236 0.3518
0.1337 0.3187 1
1.1963 1 1
0.138 0.5596 1
0.3033 0.2641 1
0.1355 0.5697 1
0.2412 0.4607 1
0.2175 0.382 1
0.2016 0.474 1
0.2721 0.3681 1
1.0583 1 1
0.2807 0.3332 1
0.9346 1 0.5
1.1821 1 1
0.2406 0.6421 1
0.1606 0.3894 1
1.0472 1 1
0.142543 1 1
0.8456 1 1
0.2083 0.3586 1
0.2904 0.4613 1
0.1407 0.4124 1
0.2292 0.4596 1
0.2067 0.2848 1
0.0833 0.9941 1
0.2035 0.3584 1
0.2193 0.4199 1
0.2746 0.3131 1
0.8815 1 0.5
0.2833 0.3995 1
0.2865 0.3137 1
0.8462 1 1
0.1451 0.2905 1
0.2083 0.5689 1
0.1556 0.6448 1
0.1667 1 0.5
1.0109 1 1
0.4699 1 1
1.1955 1 1
0.2067 0.2848 1
0.2751 0.4958 1
0.2807 0.5662 1
0.2751 0.4407 1
0.2067 0.2848 1
0.1667 1 1
0.6296 1 1
0.2067 0.2848 1
0.1407 0.5704 1
0.1483 1 1
0.1346 0.5364 1
0.1596 1 1
0.2117 0.2659 1
0.2058 0.4869 1
0.2067 0.2848 1
0.2169 0.3308 1
0.1346 0.5364 1
0.1393 0.4174 1
0.1346 0.3242 1
0.1403 0.3431 1
0.2169 0.3308 1
0.1391 0.4253 1
0.7113 1 0.5
0.9889 1 0.5
0.1346 0.3236 0.3518
0.705438 1 0.5
0.2152 0.3722 1
0.9895 1 0.5
0.9833 1 0.5
0.1353 0.2569 1
0.1667 1 1
0.3099 0.2506 1
0.2838 1 0.5
0.1444 0.2787 1
0.2027 0.5518 1
0.1446 0.446 1
0.2067 0.2848 1
0.2746 0.3412 1
0.2106 0.3282 1
0.2887 1 1
0.2904 0.4113 1
0.14 1 1
0.1407 0.2832 1
1.2226 1 1
0.2248 0.441 1
0.25 0.5968 1
0.1509 0.3184 1
0.1403 0.4265 1
0.7125 1 0.5
0.8173 1 1
0.1483 0.3003 1
0.2067 0.2848 1
0.2807 0.3332 1
1.0583 1 1
0.2715 0.5487 0.8079
0.2067 0.2848 1
0.279 0.4984 1
0.1667 1 0.5
0.3099 0.2506 1
0.9819 1 0.5
0.1549 0.3737 1

Assayability

Assay information

  • ChEMBL
  • Inhibition of Mycobacterium tuberculosis EthR interaction to ethA promoter after 5 mins by surface plasmon resonance assay
  • ChEMBL
  • Inhibition of EthR binding to ethA promoter in 106-bp biotinylated DNA preincubated for 5 mins measured for 3 mins by surface plasmon resonance assay
  • ChEMBL
  • Inhibition of Mycobacterium tuberculosis H37Rv EthR in Mycobacterium tuberculosis H37Rv expressing GFP infected mouse in RAW264.7 cells assessed as potentiation of ethionamide-induced antitubercular activity after 5 days by SYTO60-based fluorescence microscopy
  • ChEMBL
  • Inhibition of EthR in Mycobacterium tuberculosis H37Rv-GFP infected in mouse Raw 264.7 cells assessed as boosting of 0.1 uM ethionamide-induced microbial growth inhibition at 10 uM by automated fluorescent confocal microscopy
  • ChEMBL
  • Inhibition of EthR in Mycobacterium tuberculosis H37Rv-GFP infected in mouse Raw 264.7 cells assessed as compound concentration allowing 0.1 uM ethionamide to inhibit 50% microbial growth by automated fluorescent confocal microscopy

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

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User comments

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Gene identifier Rv3855 (Mycobacterium tuberculosis), Transcriptional regulatory repressor protein (TetR-family) EthR
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