pI: 4.771 |
Length (AA): 335 |
MW (Da): 34873 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There is 1 model calculated for this protein. More info on
this model, including the
model itself is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
1 | 334 | 2qo0 (A) | 0 | 317 | 99.99 | 0 | 1 | 2.15242 | -0.76 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
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Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Lower 0-20% percentile | Dormant phase, Dormant phase. | hasan murphy |
murphy | Identification of gene targets against dormant phase Mycobacterium tuberculosis infections. |
hasan | Prioritizing genomic drug targets in pathogens: application to Mycobacterium tuberculosis. |
Ortholog group members (OG5_129509)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT1G62640 | 3-ketoacyl-acyl carrier protein synthase III |
Chlamydia trachomatis | CT_239 | oxoacyl-ACP synthase III |
Escherichia coli | b1091 | 3-oxoacyl-[acyl-carrier-protein] synthase III |
Mycobacterium tuberculosis | Rv0533c | 3-oxoacyl-[acyl-carrier-protein] synthase III FabH (beta-ketoacyl-ACP synthase III) (KAS III) |
Mycobacterium ulcerans | MUL_3531 | 3-oxoacyl-ACP synthase |
Mycobacterium ulcerans | MUL_0632 | 3-oxoacyl-ACP synthase |
Mycobacterium ulcerans | MUP045 | beta-ketoacyl synthase-like protein |
Neospora caninum | NCLIV_031900 | 3-oxoacyl-(acyl-carrier-protein) synthase III family protein, putative |
Oryza sativa | 4337178 | Os04g0643300 |
Plasmodium berghei | PBANKA_0308200 | apicoplast beta-ketoacyl-acyl carrier protein synthase III precursor, putative |
Plasmodium falciparum | PF3D7_0211400 | beta-ketoacyl-ACP synthase III |
Plasmodium knowlesi | PKNH_0409900 | beta-ketoacyl-acyl carrier protein synthase III precursor, putative |
Plasmodium vivax | PVX_002960 | beta-ketoacyl-acyl carrier protein synthase III precursor, putative |
Schmidtea mediterranea | mk4.058575.00 | |
Wolbachia endosymbiont of Brugia malayi | Wbm0614 | 3-oxoacyl-ACP synthase |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
mtu541 this record | Mycobacterium tuberculosis | non-essential | nmpdr |
b1091 | Escherichia coli | essential | goodall |
PBANKA_0308200 | Plasmodium berghei | Slow | plasmo |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
Affected Entity | Phenotypic quality | Occurs in | Occurs at | Evidence | Observed in | Drugs/Inhibitors |
---|---|---|---|---|---|---|
catalytic activity (GO:0003824) | decreased (PATO:0000468) | in vitro (MI:0492) | inferred from specific protein inhibition (ECO:0000020) | Mycobacterium tuberculosis | 0 315193 584945 | |
Annotator: | crowther@u.washington.edu. | Comment: | 2007-12-20. | References: | 10840036 14552758 17524982 | |
response to drug (GO:0042493) | normal (PATO:0000461) | inferred from over expression (ECO:0000120) | Mycobacterium tuberculosis | 315193 584945 | ||
Annotator: | crowther@u.washington.edu. | Comment: | 2007-12-20. | References: | 10840036 |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Druggability index (range: 0 to 1): 0.3
Compound | Source | Reference |
---|---|---|
ChEMBL23 | References | |
Curated by TDRTargets | References | |
ChEMBL23 | References | |
Curated by TDRTargets | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References | |
ChEMBL23 | References |
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Plasmodium falciparum | beta-ketoacyl-ACP synthase III | Compounds | References |
Pseudomonas aeruginosa | 2-heptyl-4(1H)-quinolone synthase PqsD | Compounds | References |
Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) | Beta-ketoacyl-ACP synthase III | Compounds | References |
Escherichia coli | 3-oxoacyl-[acyl-carrier-protein] synthase III | Compounds | References |
Enterococcus faecalis (strain ATCC 700802 / V583) | Beta-ketoacyl-ACP synthase III | Compounds | References |
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) | Beta-ketoacyl-ACP synthase III | Compounds | References |
Staphylococcus aureus subsp. aureus Mu50 | Beta-ketoacyl-ACP synthase III | Compounds | References |
Target | Type | Source | Notes |
---|---|---|---|
Rv0533c | cloned gene | BRENDA | A gene with this EC number or name or sequence has been cloned from Mycobacterium tuberculosis ( 3 ) |
30 literature references were collected for this gene.