pI: 7.4168 |
Length (AA): 241 |
MW (Da): 27699 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 4 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
7 | 131 | 5swc (A) | 14 | 128 | 36.00 | 0.00000026 | 1 | 0.773472 | 0.71 |
13 | 172 | 2a5v (A) | 22 | 172 | 17.00 | 0 | 0.18 | 0.7157 | -0.05 |
13 | 159 | 3e3i (A) | 9 | 173 | 30.00 | 0 | 1 | 0.721758 | 0.27 |
33 | 157 | 1i6p (A) | 37 | 171 | 26.00 | 0 | 0.96 | 0.602472 | 0.11 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Ortholog group members (OG5_127503)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT1G58180 | beta carbonic anhydrase 6 |
Arabidopsis thaliana | AT3G01500 | carbonic anhydrase 1 |
Arabidopsis thaliana | AT5G14740 | carbonic anhydrase 2 |
Candida albicans | CaO19.9289 | Involved in protection against oxidative damage |
Candida albicans | CaO19.1721 | Involved in protection against oxidative damage |
Caenorhabditis elegans | CELE_T13C5.5 | Protein BCA-1 |
Dictyostelium discoideum | DDB_G0269106 | carbonic anhydrase |
Dictyostelium discoideum | DDB_G0274643 | hypothetical protein |
Drosophila melanogaster | Dmel_CG11967 | Carbonic anhydrase beta |
Escherichia coli | b0126 | carbonic anhydrase |
Escherichia coli | b0339 | carbonic anhydrase |
Entamoeba histolytica | EHI_073380 | carbonic anhydrase, putative |
Leishmania braziliensis | LbrM.06.0620 | carbonic anhydrase family protein, putative |
Leishmania donovani | LdBPK_060630.1 | carbonic anhydrase family protein, putative |
Leishmania infantum | LinJ.06.0630 | carbonic anhydrase family protein, putative |
Leishmania major | LmjF.06.0610 | carbonic anhydrase family protein, putative |
Leishmania mexicana | LmxM.06.0610 | carbonic anhydrase family protein, putative |
Mycobacterium leprae | ML1919c | CARBONIC ANHYDRASE (CARBONATE DEHYDRATASE) (CARBONIC DEHYDRATASE) |
Mycobacterium tuberculosis | Rv3588c | Beta-carbonic anhydrase CanB |
Mycobacterium ulcerans | MUL_4164 | carbonic anhydrase |
Oryza sativa | 9266472 | Os01g0640132 |
Oryza sativa | 4326583 | Os01g0639900 |
Saccharomyces cerevisiae | YNL036W | carbonate dehydratase NCE103 |
Schistosoma japonicum | Sjp_0056790 | ko:K01672 carbonic anhydrase [EC4.2.1.1], putative |
Schistosoma mansoni | Smp_004070 | carbonic anhydrase |
Schmidtea mediterranea | mk4.075550.00 |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
b0126 | Escherichia coli | essential | goodall |
b0339 | Escherichia coli | non-essential | goodall |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Saccharomyces cerevisiae | carbonate dehydratase NCE103 | Compounds | References |
Cryptococcus neoformans var. grubii | Carbonic anhydrase 2 | Compounds | References |
Candida albicans | Involved in protection against oxidative damage | Compounds | References |
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG12228) | Carbonic anhydrase | Compounds | References |
Candida glabrata CBS 138 | Carbonic anhydrase | Compounds | References |
Anopheles gambiae | AGAP002992-PA | Compounds | References |
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacterpylori) | Carbonic anhydrase 1 | Compounds | References |
Flaveria bidentis | Carbonic anhydrase | Compounds | References |
Mycobacterium tuberculosis | Beta-carbonic anhydrase CanB | Compounds | References |